Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055934.1 Olea europaea HOM05D002026 ORTHO05D002291 4.2e-65 251.1 121 100.0
Nitab4.5_0002286g0080 Nicotiana tabacum HOM05D002026 ORTHO05D002291 1.2e-19 100.1 120 49.2
Potri.006G061800 Populus trichocarpa HOM05D002026 ORTHO05D002291 1.2e-19 100.1 120 50.8
Sabra06G0044500 Salix brachista HOM05D002026 ORTHO05D002291 1.6e-19 99.8 120 50.8
Nitab4.5_0009284g0010 Nicotiana tabacum HOM05D002026 ORTHO05D002291 3.5e-19 98.6 120 49.2
CSS0033823 Camellia sinensis var. sinensis HOM05D002026 ORTHO05D002291 6.0e-19 97.8 111 51.4
Dinv41446 Davidia involucrata HOM05D002026 ORTHO05D002291 6.0e-19 97.8 115 48.7
CSS0041508 Camellia sinensis var. sinensis HOM05D002026 ORTHO05D002291 7.8e-19 97.4 111 51.4
Peaxi162Scf00088g00616 Petunia axillaris HOM05D002026 ORTHO05D002291 2.3e-18 95.9 120 46.7
CiPaw.03G252400 Carya illinoinensis HOM05D002026 ORTHO05D002291 6.6e-18 94.4 112 45.5
Nn8g39645 Nelumbo nucifera HOM05D002026 ORTHO05D002291 1.1e-17 93.6 120 45.0
GSVIVG01012856001 Vitis vinifera HOM05D002026 ORTHO05D002291 1.5e-17 93.2 120 49.2
PGSC0003DMG400030687 Solanum tuberosum HOM05D002026 ORTHO05D002291 1.9e-17 92.8 120 45.0
TAR170G0002 Trochodendron aralioides HOM05D002026 ORTHO05D002291 1.9e-17 92.8 98 52.0
Solyc07g007430.3 Solanum lycopersicum HOM05D002026 ORTHO05D002291 2.5e-17 92.4 120 45.0
Sopen07g003480 Solanum pennellii HOM05D002026 ORTHO05D002291 2.5e-17 92.4 120 45.0
Sabra18G0099900 Salix brachista HOM05D002026 ORTHO05D002291 9.5e-17 90.5 119 45.4
SalBow1G0631 Salvia bowleyana HOM05D002026 ORTHO05D002291 1.2e-16 90.1 98 50.0
TAR677G0001 Trochodendron aralioides HOM05D002026 ORTHO05D002291 2.8e-16 89.0 73 61.6
Manes.14G119200 Manihot esculenta HOM05D002026 ORTHO05D002291 3.6e-16 88.6 106 46.2
Migut.J01243 Erythranthe guttata HOM05D002026 ORTHO05D002291 8.1e-16 87.4 85 56.5
Lalb_Chr13g0301341 Lupinus albus HOM05D002026 ORTHO05D002291 1.1e-15 87.0 131 41.2
FAN23G0648 Fragaria x ananassa HOM05D002026 ORTHO05D002291 2.3e-15 85.9 120 43.3
MSTRG.6075 Avicennia marina HOM05D002026 ORTHO05D002291 3.1e-15 85.5 87 49.4
Haze_25446 Corylus avellana HOM05D002026 ORTHO05D002291 3.1e-15 85.5 66 65.2
TWI34G1350 Tripterygium wilfordii HOM05D002026 ORTHO05D002291 3.1e-15 85.5 120 45.0
Cfa002264 Carpinus fangiana HOM05D002026 ORTHO05D002291 5.2e-15 84.7 66 63.6
Lalb_Chr07g0179371 Lupinus albus HOM05D002026 ORTHO05D002291 5.2e-15 84.7 115 41.7
Oeu058582.1 Olea europaea HOM05D002026 ORTHO05D002291 6.8e-15 84.3 72 56.9
Sabra18G0101700 Salix brachista HOM05D002026 ORTHO05D002291 6.8e-15 84.3 119 44.5
Eucgr.C04398 Eucalyptus grandis HOM05D002026 ORTHO05D002291 8.9e-15 84.0 89 49.4
MBI15_g22778_MAGBIO Magnolia biondii HOM05D002026 ORTHO05D002291 1.2e-14 83.6 98 48.0
Atru.chr7.2011 Acer truncatum HOM05D002026 ORTHO05D002291 2.6e-14 82.4 122 43.4
Cc06_g07670 Coffea canephora HOM05D002026 ORTHO05D002291 2.6e-14 82.4 124 44.4
Sc08g0006050 Simmondsia chinensis HOM05D002026 ORTHO05D002291 2.6e-14 82.4 71 56.3
VMungo1215G1266 Vigna mungo HOM05D002026 ORTHO05D002291 2.6e-14 82.4 126 43.7
Actinidia38707 Actinidia chinensis HOM05D002026 ORTHO05D002291 3.4e-14 82.0 71 56.3
CAN.G1281.3 Capsicum annuum HOM05D002026 ORTHO05D002291 3.4e-14 82.0 74 56.8
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 3.4e-14 82.0 119 43.7
Potri.018G121200 Populus trichocarpa HOM05D002026 ORTHO05D002291 3.4e-14 82.0 66 63.6
QL02p090736 Quercus lobata HOM05D002026 ORTHO05D002291 3.4e-14 82.0 72 59.7
Gohir.A06G052000 Gossypium hirsutum HOM05D002026 ORTHO05D002291 4.4e-14 81.6 121 43.0
Phvul.003G172300 Phaseolus vulgaris HOM05D002026 ORTHO05D002291 4.4e-14 81.6 127 43.3
DCAR_014917 Daucus carota HOM05D002026 ORTHO05D002291 7.5e-14 80.9 123 41.5
FvH4_1g02030 Fragaria vesca HOM05D002026 ORTHO05D002291 7.5e-14 80.9 120 42.5
Thecc.09G137300 Theobroma cacao HOM05D002026 ORTHO05D002291 7.5e-14 80.9 66 62.1
Aqoxy120s001 Aquilegia oxysepala HOM05D002026 ORTHO05D002291 9.8e-14 80.5 89 51.7
Aqoxy7G02451 Aquilegia oxysepala HOM05D002026 ORTHO05D002291 9.8e-14 80.5 74 56.8
CANSAT11G1418 Cannabis sativa HOM05D002026 ORTHO05D002291 9.8e-14 80.5 100 48.0
Gorai.010G059000 Gossypium raimondii HOM05D002026 ORTHO05D002291 1.3e-13 80.1 121 42.1
Lalb_Chr12g0198391 Lupinus albus HOM05D002026 ORTHO05D002291 1.3e-13 80.1 113 46.0
Medtr4g116160 Medicago truncatula HOM05D002026 ORTHO05D002291 1.3e-13 80.1 67 62.7
Oeu028131.2 Olea europaea HOM05D002026 ORTHO05D002291 1.3e-13 80.1 72 54.2
Prupe.7G252300 Prunus persica HOM05D002026 ORTHO05D002291 1.3e-13 80.1 75 54.7
Rhsim03G0253100 Rhododendron simsii HOM05D002026 ORTHO05D002291 1.3e-13 80.1 73 54.8
Hund09309 Selenicereus undatus HOM05D002026 ORTHO05D002291 1.3e-13 80.1 72 56.9
vmacro06117 Vaccinium macrocarpon HOM05D002026 ORTHO05D002291 1.3e-13 80.1 99 47.5
Nn2g12187 Nelumbo nucifera HOM05D002026 ORTHO05D002291 2.9e-13 79.0 98 41.8
Oeu028019.1 Olea europaea HOM05D002026 ORTHO05D002291 2.9e-13 79.0 72 54.2
Psat0s571g0040 Pisum sativum HOM05D002026 ORTHO05D002291 2.9e-13 79.0 73 58.9
Actinidia26359 Actinidia chinensis HOM05D002026 ORTHO05D002291 3.7e-13 78.6 71 56.3
Duzib150G0754 Durio zibethinus HOM05D002026 ORTHO05D002291 3.7e-13 78.6 121 43.8
Glyma.13G163400 Glycine max HOM05D002026 ORTHO05D002291 3.7e-13 78.6 73 58.9
Glyma.17G107500 Glycine max HOM05D002026 ORTHO05D002291 3.7e-13 78.6 72 59.7
Gohir.D06G050900 Gossypium hirsutum HOM05D002026 ORTHO05D002291 3.7e-13 78.6 99 46.5
Lj4g0021525 Lotus japonicus HOM05D002026 ORTHO05D002291 3.7e-13 78.6 67 61.2
MSTRG.26328 Avicennia marina HOM05D002026 ORTHO05D002291 4.9e-13 78.2 122 42.6
COL.COLO4_33368 Corchorus olitorius HOM05D002026 ORTHO05D002291 4.9e-13 78.2 66 60.6
PSO017G2992 Papaver somniferum HOM05D002026 ORTHO05D002291 4.9e-13 78.2 108 46.3
Hund21596 Selenicereus undatus HOM05D002026 ORTHO05D002291 4.9e-13 78.2 112 38.4
Cpa.g.sc46.65 Carica papaya HOM05D002026 ORTHO05D002291 6.4e-13 77.8 79 50.6
Manes.06G044200 Manihot esculenta HOM05D002026 ORTHO05D002291 8.3e-13 77.4 61 63.9
MD15G1162500 Malus domestica HOM05D002026 ORTHO05D002291 1.1e-12 77.0 113 43.4
Duzib187G1734 Durio zibethinus HOM05D002026 ORTHO05D002291 1.9e-12 76.3 66 60.6
MELO3C004483.2 Cucumis melo HOM05D002026 ORTHO05D002291 2.4e-12 75.9 73 52.1
PSO170G2750 Papaver somniferum HOM05D002026 ORTHO05D002291 3.2e-12 75.5 108 46.3
PGR102G0275 Punica granatum HOM05D002026 ORTHO05D002291 3.2e-12 75.5 66 57.6
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.2e-12 75.5 72 54.2
BcaC04g19427 Brassica carinata HOM05D002026 ORTHO05D002291 4.1e-12 75.1 122 41.8
BNapus_Darmor_BZH_scaffold_38p01640 Brassica napus HOM05D002026 ORTHO05D002291 4.1e-12 75.1 68 60.3
AUR62011227 Chenopodium quinoa HOM05D002026 ORTHO05D002291 4.1e-12 75.1 72 54.2
Gohir.A08G090200 Gossypium hirsutum HOM05D002026 ORTHO05D002291 4.1e-12 75.1 66 60.6
Gohir.D08G101200 Gossypium hirsutum HOM05D002026 ORTHO05D002291 4.1e-12 75.1 66 60.6
Gorai.004G109200 Gossypium raimondii HOM05D002026 ORTHO05D002291 4.1e-12 75.1 66 60.6
BcaC03g13757 Brassica carinata HOM05D002026 ORTHO05D002291 5.4e-12 74.7 68 60.3
A02p06200 Brassica napus HOM05D002026 ORTHO05D002291 5.4e-12 74.7 68 60.3
C09p55820 Brassica napus HOM05D002026 ORTHO05D002291 5.4e-12 74.7 122 41.0
BolC2t07037H Brassica oleracea HOM05D002026 ORTHO05D002291 5.4e-12 74.7 68 60.3
BraA02t05569Z Brassica rapa HOM05D002026 ORTHO05D002291 5.4e-12 74.7 68 60.3
ECA236G2038 Erigeron canadensis HOM05D002026 ORTHO05D002291 5.4e-12 74.7 119 44.5
Ca_21638_v3 Cicer arietinum L. HOM05D002026 ORTHO05D002291 7.1e-12 74.3 67 56.7
Ciclev10007734m.g Citrus clementina HOM05D002026 ORTHO05D002291 7.1e-12 74.3 66 59.1
DCAR_009343 Daucus carota HOM05D002026 ORTHO05D002291 7.1e-12 74.3 69 55.1
BolC9t58450H Brassica oleracea HOM05D002026 ORTHO05D002291 9.2e-12 73.9 122 41.0
TPR.G7984 Trifolium pratense HOM05D002026 ORTHO05D002291 1.2e-11 73.6 67 58.2
Ah.09g224090 Amaranthus hybridus HOM05D002026 ORTHO05D002291 1.6e-11 73.2 72 52.8
HanXRQChr09g0241841 Helianthus annuus HOM05D002026 ORTHO05D002291 2.1e-11 72.8 61 59.0
AL6G31910 Arabidopsis lyrata HOM05D002026 ORTHO05D002291 2.7e-11 72.4 68 60.3
arahy.Tifrunner.gnm1.ann1.FNDT39 Arachis hypogaea HOM05D002026 ORTHO05D002291 2.7e-11 72.4 66 57.6
Carub.0006s1874 Capsella rubella HOM05D002026 ORTHO05D002291 2.7e-11 72.4 68 60.3
AUR62020007 Chenopodium quinoa HOM05D002026 ORTHO05D002291 2.7e-11 72.4 72 52.8
FAN26G0516 Fragaria x ananassa HOM05D002026 ORTHO05D002291 2.7e-11 72.4 120 40.8
Sed0011227 Sechium edule HOM05D002026 ORTHO05D002291 2.7e-11 72.4 74 55.4
AT5G20350 Arabidopsis thaliana HOM05D002026 ORTHO05D002291 3.5e-11 72.0 68 60.3
Sed0015884 Sechium edule HOM05D002026 ORTHO05D002291 3.5e-11 72.0 73 53.4
A10p19600 Brassica napus HOM05D002026 ORTHO05D002291 4.6e-11 71.6 122 41.0
BraA10t44035Z Brassica rapa HOM05D002026 ORTHO05D002291 4.6e-11 71.6 122 41.0
C03p11570 Brassica napus HOM05D002026 ORTHO05D002291 6.0e-11 71.2 68 58.8
CsaV3_2G003370 Cucumis sativus L. HOM05D002026 ORTHO05D002291 6.0e-11 71.2 66 56.1
Lj7C438G9 Lonicera japonica HOM05D002026 ORTHO05D002291 6.0e-11 71.2 72 52.8
SGA_v2.0_scaffold132G34499 Striga asiatica HOM05D002026 ORTHO05D002291 6.0e-11 71.2 85 49.4
BcaB05g22851 Brassica carinata HOM05D002026 ORTHO05D002291 7.8e-11 70.9 68 60.3
CARHR192490 Cardamine hirsuta HOM05D002026 ORTHO05D002291 7.8e-11 70.9 63 63.5
arahy.Tifrunner.gnm1.ann1.P4FGTG Arachis hypogaea HOM05D002026 ORTHO05D002291 1.0e-10 70.5 66 56.1
BolC3t13629H Brassica oleracea HOM05D002026 ORTHO05D002291 1.0e-10 70.5 112 46.4
A03p10020 Brassica napus HOM05D002026 ORTHO05D002291 1.3e-10 70.1 68 57.4
THA.LOC104811016 Tarenaya hassleriana HOM05D002026 ORTHO05D002291 1.3e-10 70.1 63 60.3
Thhalv10012979m.g Eutrema salsugineum HOM05D002026 ORTHO05D002291 1.7e-10 69.7 68 57.4
Sp6g24080 Schrenkiella parvula HOM05D002026 ORTHO05D002291 1.7e-10 69.7 68 57.4
THA.LOC104799627 Tarenaya hassleriana HOM05D002026 ORTHO05D002291 2.3e-10 69.3 110 40.0
EL10Ac8g18787 Beta vulgaris HOM05D002026 ORTHO05D002291 3.9e-10 68.6 85 42.4
BcaB01g04791 Brassica carinata HOM05D002026 ORTHO05D002291 3.9e-10 68.6 112 45.5
BraA03t10312Z Brassica rapa HOM05D002026 ORTHO05D002291 3.9e-10 68.6 112 45.5
BcaB08g36495 Brassica carinata HOM05D002026 ORTHO05D002291 5.1e-10 68.2 68 55.9
RcHm_v2.0_Chr2g0087091 Rosa chinensis HOM05D002026 ORTHO05D002291 5.1e-10 68.2 58 58.6
Gohir.D13G207600 Gossypium hirsutum HOM05D002026 ORTHO05D002291 6.6e-10 67.8 98 42.9
TAR383G0696 Trochodendron aralioides HOM05D002026 ORTHO05D002291 6.6e-10 67.8 66 53.0
Zm00001eb386990 Zea mays HOM05D002026 ORTHO05D002291 6.6e-10 67.8 74 50.0
Lsat_1_v5_gn_8_62900 Lactuca sativa HOM05D002026 ORTHO05D002291 8.6e-10 67.4 62 59.7
ATR0767G066 Amborella trichopoda HOM05D002026 ORTHO05D002291 1.5e-09 66.6 58 56.9
ECA240G2533 Erigeron canadensis HOM05D002026 ORTHO05D002291 1.5e-09 66.6 68 55.9
Gorai.013G236500 Gossypium raimondii HOM05D002026 ORTHO05D002291 1.9e-09 66.2 98 41.8
HanXRQChr05g0143461 Helianthus annuus HOM05D002026 ORTHO05D002291 1.9e-09 66.2 61 57.4
Zm00001eb275220 Zea mays HOM05D002026 ORTHO05D002291 1.9e-09 66.2 115 41.7
Gorai.009G014100 Gossypium raimondii HOM05D002026 ORTHO05D002291 2.5e-09 65.9 66 50.0
CDE05G3103 Ceratophyllum demersum HOM05D002026 ORTHO05D002291 4.3e-09 65.1 120 38.3
Gohir.A05G013000 Gossypium hirsutum HOM05D002026 ORTHO05D002291 4.3e-09 65.1 66 48.5
Aa31LG4G13330 Aethionema arabicum HOM05D002026 ORTHO05D002291 5.6e-09 64.7 111 39.6
Gohir.D05G014100 Gossypium hirsutum HOM05D002026 ORTHO05D002291 5.6e-09 64.7 66 48.5
ClCG11G003500 Citrullus lanatus HOM05D002026 ORTHO05D002291 7.3e-09 64.3 73 49.3
Gohir.A13G201800 Gossypium hirsutum HOM05D002026 ORTHO05D002291 7.3e-09 64.3 102 42.2
MBI14_g24980_MAGBIO Magnolia biondii HOM05D002026 ORTHO05D002291 7.3e-09 64.3 66 56.1
MD02G1018500 Malus domestica HOM05D002026 ORTHO05D002291 9.5e-09 63.9 87 41.4
SEGI_20388 Sequoiadendron giganteum HOM05D002026 ORTHO05D002291 9.5e-09 63.9 74 45.9
Lsat_1_v5_gn_7_45841 Lactuca sativa HOM05D002026 ORTHO05D002291 1.2e-08 63.5 75 49.3
Os02g0184000 Oryza sativa ssp. japonica HOM05D002026 ORTHO05D002291 1.6e-08 63.2 74 47.3
SHI03251 Sapria himalayana HOM05D002026 ORTHO05D002291 2.1e-08 62.8 121 37.2
Medtr1g112830 Medicago truncatula HOM05D002026 ORTHO05D002291 2.8e-08 62.4 46 65.2
Zm00001eb234330 Zea mays HOM05D002026 ORTHO05D002291 3.6e-08 62.0 79 46.8
Lj9C704G6 Lonicera japonica HOM05D002026 ORTHO05D002291 1.1e-07 60.5 84 45.2
Os06g0644500 Oryza sativa ssp. japonica HOM05D002026 ORTHO05D002291 3.1e-07 58.9 111 34.2
vmacro22982 Vaccinium macrocarpon HOM05D002026 ORTHO05D002291 8.9e-07 57.4 52 57.7
PGR142G2732 Punica granatum HOM05D002026 ORTHO05D002291 1.5e-06 56.6 40 65.0
Eucgr.C00485 Eucalyptus grandis HOM05D002026 ORTHO05D002291 2.6e-06 55.8 58 48.3
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.6e-06 55.8 42 64.3
Peaxi162Scf00299g00344 Petunia axillaris HOM05D002026 ORTHO05D002291 2.6e-06 55.8 40 67.5
Nitab4.5_0001477g0220 Nicotiana tabacum HOM05D002026 ORTHO05D002291 3.4e-06 55.5 40 67.5
Nitab4.5_0012619g0010 Nicotiana tabacum HOM05D002026 ORTHO05D002291 3.4e-06 55.5 40 67.5
Hma1.2p1_2001F.1_g310670 Hydrangea macrophylla HOM05D002026 ORTHO05D002291 4.4e-06 55.1 40 65.0
Solyc01g106440.3 Solanum lycopersicum HOM05D002026 ORTHO05D002291 4.4e-06 55.1 40 67.5
Sopen01g048810 Solanum pennellii HOM05D002026 ORTHO05D002291 4.4e-06 55.1 40 67.5
PGSC0003DMG400003113 Solanum tuberosum HOM05D002026 ORTHO05D002291 4.4e-06 55.1 40 67.5
SGA_v2.0_scaffold32G12961 Striga asiatica HOM05D002026 ORTHO05D002291 7.6e-06 54.3 43 58.1
ATR0767G100 Amborella trichopoda HOM05D002026 ORTHO05D002291 9.9e-06 53.9 40 62.5
MSTRG.16651 Avicennia marina HOM05D002026 ORTHO05D002291 9.9e-06 53.9 40 62.5
TWI59G0597 Tripterygium wilfordii HOM05D002026 ORTHO05D002291 9.9e-06 53.9 40 62.5
HPP92_003861 Vanilla planifolia HOM05D002026 ORTHO05D002291 9.9e-06 53.9 106 32.1


User provided reference genes

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