Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 3189.8 1591 100.0
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1934.1 1588 62.7
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1896.3 1588 62.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 1880.1 1615 59.7
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1759.6 1607 57.7
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1756.9 1607 57.6
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1753.8 1605 56.3
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1741.5 1601 57.8
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1733.0 1652 56.2
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1728.0 1599 56.5
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1704.1 1597 55.2
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1700.6 1623 55.1
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1695.6 1602 55.6
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1694.5 1601 56.0
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1691.8 1601 55.5
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1676.8 1601 55.2
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1675.2 1556 56.5
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1666.0 1817 50.2
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1660.6 1619 54.4
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1654.4 1606 54.4
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1651.7 1612 55.4
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1647.9 1598 54.6
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1640.9 1601 54.5
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1621.7 1600 53.8
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1604.3 1615 52.8
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1604.0 1597 53.9
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1589.7 1446 57.5
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1566.6 1604 52.2
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1563.1 1599 52.2
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1558.1 1616 52.1
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1557.0 1604 52.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1542.7 1600 51.4
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1542.7 1599 51.7
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1540.8 1596 51.6
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1538.9 1610 50.7
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1531.2 1434 55.2
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1529.2 1599 51.5
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1524.2 1609 51.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1522.7 1587 51.9
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1508.0 1609 51.0
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1499.2 1638 50.2
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1499.2 1391 55.6
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1492.2 1603 50.9
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1489.9 1598 50.0
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1488.4 1600 49.6
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1487.6 1571 52.6
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1480.3 1363 57.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1478.8 1603 50.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1474.5 1624 51.2
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1468.4 1598 49.4
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1463.0 1609 49.4
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1459.5 1605 49.9
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1448.0 1589 49.2
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1445.6 1600 49.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1441.4 1601 48.6
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1431.4 1605 48.6
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1427.9 1604 48.5
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1427.2 1606 48.9
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1426.8 1606 48.7
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1422.1 1603 48.5
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1420.6 1600 48.2
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1417.5 1601 48.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1417.1 1606 48.6
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1413.7 1626 47.8
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1412.9 1600 48.2
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1409.0 1608 48.4
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1408.7 1611 49.2
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1408.7 1607 49.6
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1386.7 1601 47.7
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1357.4 1601 47.8
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1344.7 1603 46.5
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1318.9 1606 46.1
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1269.2 1347 50.9
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1247.6 1310 52.1
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1240.7 1331 50.5
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1213.4 1387 48.5
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1185.2 1590 43.0
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1169.1 1017 60.2
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1165.6 1023 59.4
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 0.0e+00 1152.5 1374 48.3
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.7e-302 1043.5 1309 46.7
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.9e-261 907.1 910 52.6
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.5e-260 902.9 856 57.6
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 3.4e-255 886.3 1317 41.4
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 3.2e-237 826.6 1580 34.4
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 7.1e-237 825.5 909 50.7
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 6.2e-233 812.4 792 53.0
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 5.3e-232 809.3 636 66.2
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 5.0e-214 749.6 647 60.4
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.2e-169 601.3 622 52.1
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 3.2e-160 570.9 1431 29.9
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 8.9e-147 526.2 529 55.6
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 7.8e-135 486.5 478 55.6
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.5e-125 454.9 582 44.0
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 4.9e-121 440.7 362 61.0
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.8e-108 398.3 350 58.3
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.7e-108 397.9 376 56.4
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.9e-104 385.6 544 39.3
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 8.7e-102 376.7 472 43.0
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 6.1e-87 327.4 375 48.3
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.2e-84 318.9 422 42.4
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 2.0e-82 312.4 347 49.6
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 8.8e-78 297.0 258 57.8
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 9.7e-77 293.5 387 42.4
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.4e-72 276.9 250 60.8
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.4e-70 273.1 247 55.1
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.7e-68 266.2 490 34.7
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 8.3e-68 263.8 266 53.4
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 1.1e-67 263.5 250 52.4
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 3.5e-66 258.5 273 52.4
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.2e-60 239.2 438 38.1
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 7.7e-58 230.7 391 37.9
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 9.5e-56 223.8 137 78.1
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.5e-53 216.5 393 36.6
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.7e-53 214.5 178 61.8
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 2.0e-50 206.1 901 25.7
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.0e-49 203.8 401 35.9
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 8.6e-49 200.7 137 71.5
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 1.2e-39 170.2 157 53.5
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 1.7e-36 159.8 134 55.2
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.1e-34 152.9 154 55.2
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 3.5e-34 152.1 207 41.5
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 6.0e-34 151.4 138 58.0
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.0e-33 149.1 153 50.3
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 8.6e-33 147.5 150 49.3
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 6.4e-28 131.3 279 29.4
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 8.4e-28 131.0 184 42.9
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.9e-27 129.8 85 75.3
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.9e-27 129.8 85 76.5
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 2.4e-27 129.4 130 56.9
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.2e-27 129.0 162 45.7
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 6.6e-25 121.3 161 42.2
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.3e-24 119.0 82 69.5
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 7.3e-24 117.9 82 69.5
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 9.6e-24 117.5 82 69.5
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.6e-23 116.7 471 25.3
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 6.2e-23 114.8 77 72.7
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.2e-20 106.3 234 29.9
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.4e-20 104.4 83 62.7
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.7e-18 99.4 125 40.0
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.5e-16 92.8 131 41.2
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 6.2e-15 88.2 70 64.3
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.8e-14 86.7 164 37.8
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 3.1e-14 85.9 181 30.9
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.2e-13 84.0 70 62.9
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 1.2e-13 84.0 201 28.9
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.5e-13 83.6 63 65.1
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 9.9e-13 80.9 64 64.1
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 1.3e-12 80.5 63 54.0
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 3.2e-11 75.9 49 75.5
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 3.2e-11 75.9 49 75.5
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 3.2e-11 75.9 49 75.5
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 2.1e-10 73.2 63 58.7
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 2.7e-10 72.8 116 32.8
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 3.5e-10 72.4 48 72.9
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 1.8e-09 70.1 236 28.4
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 3.0e-09 69.3 164 31.7
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 3.9e-09 68.9 157 31.2
TAR369G0820 Trochodendron aralioides HOM05D049058 ORTHO05D005167 8.7e-09 67.8 110 44.5
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 2.5e-08 66.2 208 28.8
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 3.3e-08 65.9 194 27.3
TAR369G0648 Trochodendron aralioides HOM05D049058 ORTHO05D005167 4.3e-08 65.5 87 50.6
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 1.6e-07 63.5 133 30.8
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.6e-07 63.5 407 20.9
BcaNung07323 Brassica carinata HOM05D003893 ORTHO05D005167 1.4e-06 60.5 60 51.7


User provided reference genes

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