Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 7.2e-306 1053.1 545 100.0
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 2.2e-230 802.4 544 75.4
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.8e-217 758.8 535 73.3
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.9e-213 746.1 539 72.2
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 5.5e-213 744.6 550 70.9
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.2e-205 718.4 546 68.9
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 3.0e-203 712.2 549 67.2
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.9e-202 709.5 544 67.6
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.3e-201 706.8 562 66.2
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.2e-199 700.3 552 64.9
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.0e-198 697.2 546 67.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.3e-198 696.8 535 67.5
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.9e-198 695.7 546 67.0
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 5.0e-198 694.9 535 67.3
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 6.5e-198 694.5 531 68.9
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.4e-197 693.3 543 66.7
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.1e-196 689.5 541 65.6
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 4.7e-196 688.3 536 67.5
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 6.1e-196 688.0 543 68.3
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 7.9e-196 687.6 541 66.5
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 6.7e-195 684.5 559 63.3
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.5e-194 683.3 550 64.9
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.5e-194 683.3 546 66.1
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.5e-194 683.3 555 63.6
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 7.4e-194 681.0 546 64.5
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 3.7e-193 678.7 547 62.7
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 6.3e-193 677.9 552 64.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.1e-192 677.2 545 64.6
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.4e-192 676.8 560 63.6
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.4e-192 676.0 553 63.5
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 5.3e-192 674.9 553 64.4
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 5.3e-192 674.9 539 65.3
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 9.1e-192 674.1 538 64.3
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 9.1e-192 674.1 546 65.6
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.2e-191 673.7 539 64.2
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.5e-191 673.3 546 65.4
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.0e-191 672.9 531 65.5
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.0e-191 672.9 511 69.1
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 2.0e-191 672.9 560 63.4
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.6e-191 672.5 540 64.1
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.3e-190 670.2 549 62.3
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.7e-190 669.8 569 62.6
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.7e-190 669.8 538 64.1
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 2.2e-190 669.5 564 63.1
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.2e-190 669.5 554 63.4
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.9e-190 669.1 569 62.7
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 5.0e-190 668.3 546 64.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 5.0e-190 668.3 544 63.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 6.5e-190 667.9 549 63.2
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.5e-189 666.0 545 64.4
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.2e-189 665.2 579 61.5
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.2e-189 665.2 538 63.4
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.1e-188 662.9 541 63.8
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 2.7e-188 662.5 544 63.1
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.7e-188 661.8 581 60.9
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 8.0e-188 661.0 545 62.6
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.3e-187 659.4 579 61.3
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.5e-186 656.8 539 63.3
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.3e-185 653.7 545 62.9
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.7e-185 653.3 572 61.2
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 6.3e-185 651.4 538 63.6
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.1e-184 650.6 553 62.9
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 3.1e-184 649.0 537 64.4
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 5.0e-182 641.7 536 63.1
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 6.5e-182 641.3 578 59.2
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 2.5e-181 639.4 536 62.9
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 8.0e-180 634.4 546 62.8
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.8e-179 633.3 546 62.6
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.0e-178 629.8 559 60.5
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.7e-177 626.7 498 63.3
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 3.1e-176 622.5 536 61.4
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 1.0e-174 617.5 546 59.3
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 5.0e-174 615.1 549 58.7
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.2e-172 610.5 548 58.9
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 1.2e-172 610.5 548 58.9
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 6.1e-172 608.2 535 61.5
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 4.0e-171 605.5 546 58.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 5.2e-171 605.1 548 58.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 5.2e-171 605.1 538 59.3
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 8.8e-171 604.4 546 58.8
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 4.4e-170 602.1 544 58.6
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 9.8e-170 600.9 538 58.0
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.8e-168 596.7 542 58.3
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 3.1e-168 595.9 539 58.6
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.7e-167 592.8 535 58.1
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.5e-167 592.0 562 57.3
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 7.7e-167 591.3 469 66.5
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.7e-166 590.1 541 58.8
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 5.0e-166 588.6 544 59.2
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 5.5e-165 585.1 546 59.2
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.6e-159 567.0 565 54.2
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.2e-156 557.4 543 55.2
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 5.8e-154 548.5 541 58.6
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.9e-153 546.2 544 55.3
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.9e-152 543.5 560 53.8
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.4e-146 522.3 541 52.7
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 8.6e-142 508.1 544 52.9
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 1.5e-141 507.3 543 53.6
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.5e-141 507.3 551 51.9
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 3.2e-136 489.6 550 55.3
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.6e-135 485.7 337 74.5
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 6.0e-135 485.3 570 47.9
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 6.6e-126 455.3 548 45.3
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 8.7e-126 454.9 512 51.4
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 3.6e-124 449.5 561 47.1
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 5.4e-120 435.6 294 75.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 3.1e-115 419.9 568 43.5
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 5.8e-114 415.6 494 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 5.3e-107 392.5 564 41.8
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.1e-96 358.2 650 35.7
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.6e-90 337.0 278 62.9
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.3e-85 320.1 298 55.4
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.7e-84 316.6 373 50.1
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.8e-84 316.2 324 51.9
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.4e-83 314.7 422 44.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 3.2e-72 276.9 208 68.8
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.3e-60 238.4 590 29.2
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.3e-57 228.4 632 28.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 6.5e-57 226.1 271 46.1
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.1e-51 206.8 150 65.3
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 2.2e-44 184.5 584 27.1
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.4e-43 181.0 250 43.6
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.0e-41 175.6 245 43.3
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.7e-41 174.9 265 43.0
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.8e-37 159.8 185 49.7
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 6.4e-36 156.4 244 41.4
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 4.1e-35 153.7 177 50.8
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 5.4e-35 153.3 244 41.0
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 5.6e-32 143.3 98 68.4
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 7.3e-32 142.9 109 67.0
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.1e-30 139.0 104 63.5
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 6.8e-30 136.3 299 33.8
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.1e-27 129.0 99 66.7
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.6e-26 125.2 119 52.1
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.3e-25 122.1 151 49.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.9e-24 118.2 83 66.3
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 4.9e-20 103.6 295 24.4
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 7.3e-16 89.7 73 57.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 6.8e-14 83.2 77 61.0
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 4.9e-12 77.0 183 36.1
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 8.4e-12 76.3 149 38.3
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 5.4e-11 73.6 142 33.8
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.6e-10 72.0 120 40.0
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 2.1e-10 71.6 142 33.1
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 4.6e-10 70.5 142 32.4
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.0e-10 70.1 142 32.4
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.0e-10 70.1 142 32.4
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 1.7e-09 68.6 142 31.7
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.9e-09 67.4 109 40.4
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 3.3e-08 64.3 47 55.3
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 4.3e-08 63.9 48 54.2
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 4.3e-08 63.9 48 54.2
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 6.2e-07 60.1 119 28.6
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 6.9e-06 56.6 72 44.4


User provided reference genes

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