Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.0e-121 439.1 225 100.0
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 3.4e-100 368.6 225 81.8
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.7e-97 359.0 225 81.3
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 6.4e-91 337.8 225 75.6
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.2e-89 333.6 179 95.0
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 5.0e-88 328.2 191 85.3
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 4.0e-85 318.5 229 71.2
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 4.1e-82 308.5 250 64.0
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 2.3e-80 302.8 225 69.8
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.1e-78 296.2 234 69.2
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 2.6e-76 289.3 225 68.4
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 4.9e-75 285.0 218 69.7
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.4e-74 282.7 225 65.8
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.2e-74 282.3 225 66.2
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.2e-74 282.3 225 66.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.6e-73 280.0 231 64.5
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.0e-72 277.3 225 64.4
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 3.9e-72 275.4 223 66.4
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.9e-72 275.4 222 66.2
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.9e-71 273.1 222 64.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.5e-71 272.7 232 63.8
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 7.3e-71 271.2 228 64.0
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.1e-69 267.3 228 63.2
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.1e-69 267.3 225 63.1
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.4e-69 266.9 223 61.9
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 5.2e-69 265.0 228 62.3
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.5e-68 263.5 226 60.6
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.6e-68 262.7 222 60.4
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.4e-66 256.9 226 59.7
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 3.2e-66 255.8 226 59.7
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 3.2e-66 255.8 224 60.3
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 4.2e-66 255.4 223 59.6
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 5.4e-66 255.0 225 59.6
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 7.1e-66 254.6 273 55.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 3.5e-65 252.3 221 57.0
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 6.0e-65 251.5 225 59.6
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 6.0e-65 251.5 225 59.1
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 7.8e-65 251.1 228 60.5
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.7e-64 250.0 228 60.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-63 246.9 228 57.0
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.5e-63 246.9 228 57.0
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.9e-63 246.5 225 57.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.5e-63 246.1 222 58.1
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 5.6e-63 245.0 228 57.0
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.1e-62 243.0 227 56.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 2.1e-62 243.0 227 58.1
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 2.8e-62 242.7 228 58.8
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.8e-62 242.7 225 56.9
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.8e-62 242.7 227 58.6
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.6e-62 242.3 227 58.6
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 4.8e-62 241.9 227 55.9
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 8.1e-62 241.1 229 55.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 8.1e-62 241.1 227 58.1
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.1e-61 240.7 221 55.2
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.4e-61 240.4 227 56.8
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.4e-61 239.6 227 55.5
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 6.9e-61 238.0 216 56.9
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 2.0e-60 236.5 226 55.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.4e-60 235.7 229 55.9
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 3.4e-60 235.7 227 56.8
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 3.4e-60 235.7 229 54.1
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.4e-60 235.3 226 54.4
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 4.4e-60 235.3 224 55.8
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.8e-60 235.0 225 60.0
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 9.9e-60 234.2 226 54.9
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 2.2e-59 233.0 224 54.5
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 2.2e-59 233.0 226 54.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 2.2e-59 233.0 224 55.4
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.8e-59 232.3 225 54.2
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.8e-59 232.3 227 55.5
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.9e-59 231.9 225 54.2
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.2e-58 229.2 226 52.2
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.2e-58 228.8 224 54.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 4.2e-58 228.8 225 56.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 5.4e-58 228.4 226 52.2
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.4e-58 228.4 225 53.3
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 7.1e-58 228.0 221 51.1
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 1.2e-57 227.3 229 52.4
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.2e-57 227.3 229 54.1
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.2e-57 227.3 219 54.8
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.7e-57 226.1 229 52.4
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 7.9e-57 224.6 220 53.2
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 7.9e-57 224.6 229 51.5
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 1.0e-56 224.2 229 51.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.3e-56 223.8 221 54.3
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.3e-56 223.8 228 53.1
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.3e-56 223.8 229 52.0
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 1.3e-56 223.8 227 53.3
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.7e-56 223.4 226 51.3
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.7e-56 223.4 226 51.3
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.7e-56 223.4 218 53.7
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.7e-56 223.4 179 68.7
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.0e-56 222.6 217 53.0
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.9e-56 222.2 220 54.5
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.1e-56 221.9 218 53.7
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 8.7e-56 221.1 218 53.7
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.9e-55 219.9 229 50.2
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 9.6e-55 217.6 210 56.2
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.3e-54 217.2 227 50.7
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.3e-54 217.2 227 50.7
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.6e-54 216.9 195 59.0
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 2.8e-54 216.1 229 49.3
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.4e-53 213.8 226 53.1
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.3e-53 211.8 223 52.5
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.6e-52 209.5 212 57.5
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.4e-52 209.1 220 50.9
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 4.5e-52 208.8 220 50.0
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 9.9e-52 207.6 220 50.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 4.9e-51 205.3 290 43.1
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 6.4e-51 204.9 227 46.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 7.1e-50 201.4 200 53.0
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.2e-49 200.7 217 49.8
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.7e-48 194.9 216 50.5
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-47 193.7 222 45.9
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 9.6e-47 191.0 146 65.8
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.4e-45 187.2 143 65.0
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 5.3e-45 185.3 222 44.6
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 9.0e-45 184.5 222 44.6
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.2e-44 184.1 220 44.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 5.8e-44 181.8 225 47.1
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.9e-42 176.8 175 54.3
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.9e-42 176.8 221 44.8
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.6e-41 173.7 225 43.1
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.6e-41 173.7 225 43.1
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 4.6e-41 172.2 116 71.6
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.3e-40 170.6 216 39.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 6.7e-40 168.3 141 56.7
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.4e-37 160.6 171 52.6
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 4.1e-37 159.1 179 54.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-35 153.7 161 52.2
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 8.4e-35 151.4 115 64.3
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.1e-34 151.0 222 37.4
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 9.3e-34 147.9 227 38.3
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.5e-33 146.0 218 44.5
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 3.5e-33 146.0 200 45.5
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 4.6e-33 145.6 110 61.8
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 6.1e-33 145.2 182 42.9
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.3e-31 139.4 118 58.5
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.7e-31 137.9 225 40.9
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.8e-29 133.7 95 73.7
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 7.7e-28 128.3 111 53.2
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 7.7e-28 128.3 146 49.3
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.7e-27 127.1 224 37.1
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 8.8e-24 114.8 222 32.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 5.7e-23 112.1 82 70.7
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 5.3e-21 105.5 140 45.0
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.7e-19 100.5 57 86.0
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.2e-18 96.3 113 48.7
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 3.2e-18 96.3 140 42.9
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.2e-17 94.4 127 47.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.7e-17 92.4 59 74.6
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 3.3e-15 86.3 224 32.6
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.3e-14 84.3 226 29.6
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 4.8e-14 82.4 224 29.0
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.3e-13 79.0 49 73.5
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 3.6e-09 66.2 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 2.6e-07 60.1 112 32.1


User provided reference genes

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