Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 0.0e+00 1370.9 770 100.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.5e-301 1039.3 776 80.0
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.6e-301 1038.5 783 77.3
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 5.6e-296 1020.8 770 77.9
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 6.2e-295 1017.3 812 64.0
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 5.4e-291 1004.2 783 66.0
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.2e-290 1003.0 778 77.4
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.0e-289 1000.0 771 78.0
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 2.5e-288 995.3 842 71.5
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.4e-284 980.7 777 75.4
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.1e-283 979.9 771 76.9
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.2e-282 976.5 662 73.1
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.3e-281 973.0 771 75.1
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 3.0e-281 971.8 773 74.4
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 3.6e-279 964.9 771 74.7
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.8e-278 962.6 771 74.7
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 4.9e-276 954.5 789 65.0
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.6e-274 949.5 779 74.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.6e-274 948.0 795 71.8
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.5e-272 942.2 775 74.2
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 2.5e-272 942.2 775 74.1
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.6e-269 932.2 776 73.6
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.7e-268 929.5 784 73.1
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.4e-267 926.4 774 73.4
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.2e-267 924.9 770 72.2
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.1e-264 916.8 775 72.6
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 3.3e-264 915.2 781 72.9
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 3.7e-263 911.8 779 72.7
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.1e-262 910.2 775 72.3
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 2.0e-261 906.0 766 73.2
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 4.5e-261 904.8 775 72.8
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.4e-259 899.8 782 72.6
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 5.5e-259 897.9 775 72.6
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 5.5e-259 897.9 775 72.6
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 2.1e-258 896.0 778 73.0
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 3.5e-258 895.2 772 70.6
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.3e-257 892.5 664 69.9
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 3.9e-257 891.7 771 70.2
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 7.4e-256 887.5 782 71.6
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.7e-255 885.2 773 71.2
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 3.7e-255 885.2 781 70.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.2e-255 884.4 773 70.9
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.4e-254 882.5 785 70.1
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.1e-254 882.1 771 71.1
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 4.0e-254 881.7 787 69.8
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 9.0e-254 880.6 783 70.2
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 2.6e-253 879.0 773 71.2
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 4.5e-253 878.2 831 68.0
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.0e-252 877.1 774 70.4
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 3.8e-252 875.2 785 69.6
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.5e-252 874.4 779 70.7
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 6.5e-252 874.4 830 68.8
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 7.9e-250 867.5 775 70.5
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.8e-249 866.3 798 68.7
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.3e-247 860.1 769 70.9
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 3.7e-247 858.6 774 69.6
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 9.0e-246 854.0 770 68.8
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 1.5e-245 853.2 774 70.2
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.9e-245 851.3 773 70.0
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.3e-244 850.1 791 68.8
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-244 849.7 773 69.9
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 2.2e-244 849.4 773 70.1
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.8e-244 848.6 774 69.9
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-243 847.0 774 69.8
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 3.2e-243 845.5 771 69.6
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 9.4e-243 844.0 782 69.7
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.6e-242 843.2 775 67.9
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.6e-242 843.2 772 69.4
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 2.7e-242 842.4 771 69.5
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.4e-241 840.1 781 68.9
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 6.7e-241 837.8 771 69.4
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.1e-240 837.0 779 57.9
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.4e-238 830.1 777 67.7
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 4.1e-238 828.6 786 67.4
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 5.3e-238 828.2 709 71.8
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.2e-236 822.8 772 67.7
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 6.5e-236 821.2 788 68.5
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.4e-235 820.1 778 61.1
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 4.7e-234 815.1 772 66.6
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 6.1e-234 814.7 774 68.1
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 6.1e-234 814.7 774 67.6
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.8e-233 813.1 780 66.7
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 3.3e-232 808.9 777 67.2
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 4.4e-232 808.5 772 67.4
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 2.4e-230 802.7 772 67.6
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 3.5e-229 798.9 774 66.4
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.7e-228 796.6 772 66.5
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.5e-227 793.5 772 65.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 3.2e-227 792.3 660 63.6
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-226 790.0 774 65.9
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.4e-225 786.9 781 66.6
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 2.3e-225 786.2 772 65.7
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 6.7e-225 784.6 786 66.0
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 3.7e-223 778.9 772 65.7
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-221 773.5 774 65.5
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.7e-220 770.0 779 65.1
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.2e-220 769.6 773 65.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 3.8e-220 768.8 775 65.3
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 8.5e-220 767.7 774 64.7
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 8.8e-217 757.7 871 61.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 3.0e-209 732.6 790 61.9
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 6.8e-209 731.5 775 63.9
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 2.0e-208 729.9 780 62.8
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 6.3e-199 698.4 822 60.3
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.0e-193 679.1 574 75.1
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 3.2e-190 669.5 775 56.9
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.3e-187 659.4 1249 44.3
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.7e-183 646.0 534 62.0
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 1.4e-182 644.0 742 58.9
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 2.7e-181 639.8 588 59.5
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 3.6e-170 602.8 790 53.9
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.2e-159 567.0 475 61.7
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 4.2e-158 562.8 795 52.5
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.9e-155 553.9 786 55.0
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 5.8e-152 542.3 784 54.5
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.7e-149 533.5 789 52.0
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.7e-149 533.5 784 53.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 2.5e-139 500.4 456 57.2
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.0e-116 425.2 387 57.4
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 4.4e-115 419.9 675 41.3
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 5.0e-111 406.4 360 81.9
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.9e-110 404.4 365 81.6
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.2e-104 385.2 390 75.1
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 6.1e-101 372.9 378 53.7
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.3e-95 355.1 304 88.5
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.3e-87 328.6 333 56.2
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 5.2e-76 290.0 495 39.8
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 5.8e-75 286.6 207 65.7
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.3e-74 285.4 758 32.7
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 4.6e-72 276.9 893 37.5
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-71 274.6 296 52.7
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-66 258.8 166 74.7
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 3.6e-61 240.7 489 36.0
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.6e-56 225.3 146 74.0
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 3.9e-55 220.7 710 30.1
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.9e-44 183.3 259 42.5
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-39 169.1 98 84.7
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.8e-39 168.7 259 40.5
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.4e-36 158.3 155 57.4
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 2.6e-35 154.8 175 49.1
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 7.6e-35 153.3 184 52.7
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-34 152.1 260 38.5
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-34 150.6 92 78.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 6.4e-34 150.2 141 58.2
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.9e-32 143.3 83 83.1
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 8.7e-31 139.8 132 52.3
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.7e-31 139.8 84 82.1
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-30 137.5 82 78.0
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-26 124.0 66 84.8
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 4.6e-24 117.5 131 52.7
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 1.8e-23 115.5 128 56.2
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 2.3e-23 115.2 93 64.5
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.0e-23 114.8 69 79.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-22 111.3 61 85.2
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.4e-22 110.2 61 83.6
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 6.3e-21 107.1 157 91.7
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-21 106.7 102 55.9
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 2.0e-19 102.1 181 39.8
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 3.4e-19 101.3 122 48.4
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.5e-19 100.9 154 91.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-18 98.2 58 79.3
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.7e-16 91.7 78 56.4
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.3e-13 80.5 50 68.0
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.1e-12 79.7 84 52.4
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.0e-10 73.2 217 30.4
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 3.8e-10 71.2 141 39.7
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 4.2e-09 67.8 62 54.8
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-07 62.8 45 71.1
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.8e-07 62.4 43 67.4
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.6e-06 58.5 31 83.9
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.4e-06 57.8 30 86.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 9.7e-06 56.6 31 80.6


User provided reference genes

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