Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 8.3e-55 216.9 114 100.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.8e-41 172.6 106 84.0
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.7e-39 166.0 106 82.1
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 2.9e-39 165.2 108 80.6
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 6.4e-39 164.1 108 78.7
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.4e-39 164.1 103 84.5
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.1e-38 163.3 102 82.4
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.4e-38 162.9 110 78.2
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.4e-38 162.9 110 78.2
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.9e-38 162.5 101 85.1
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.9e-38 162.5 106 80.2
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.9e-38 162.5 106 80.2
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.4e-38 162.2 102 83.3
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 2.4e-38 162.2 104 81.7
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 4.1e-38 161.4 102 79.4
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 5.4e-38 161.0 103 83.5
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 7.1e-38 160.6 100 85.0
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 7.1e-38 160.6 106 77.4
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 9.2e-38 160.2 102 83.3
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 9.2e-38 160.2 108 77.8
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.1e-37 159.1 106 79.2
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.1e-37 159.1 106 79.2
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.1e-37 159.1 106 79.2
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.1e-37 159.1 101 82.2
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.1e-37 159.1 102 81.4
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.1e-37 159.1 109 77.1
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.1e-37 159.1 109 77.1
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.7e-37 158.7 102 79.4
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 3.5e-37 158.3 102 81.4
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.5e-37 158.3 108 77.8
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.5e-37 158.3 101 81.2
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.5e-37 158.3 101 81.2
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 3.5e-37 158.3 102 81.4
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 4.6e-37 157.9 106 76.4
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.0e-37 157.5 108 77.8
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.8e-37 157.1 108 77.8
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 7.8e-37 157.1 101 80.2
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.0e-36 156.8 106 78.3
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.3e-36 156.4 105 79.0
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.3e-36 156.4 105 78.1
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 1.7e-36 156.0 102 79.4
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.7e-36 156.0 106 78.3
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.3e-36 155.6 102 77.5
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 2.3e-36 155.6 101 81.2
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.3e-36 155.6 105 79.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.3e-36 155.6 105 79.0
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 3.0e-36 155.2 109 75.2
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 3.9e-36 154.8 102 78.4
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 3.9e-36 154.8 104 79.8
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 3.9e-36 154.8 105 76.2
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 8.6e-36 153.7 101 77.2
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 8.6e-36 153.7 101 79.2
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.1e-35 153.3 102 79.4
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.1e-35 153.3 101 78.2
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.1e-35 153.3 102 77.5
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.1e-35 153.3 108 72.2
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.5e-35 152.9 106 75.5
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.5e-35 152.9 101 78.2
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.5e-35 152.9 102 78.4
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.9e-35 152.5 108 70.4
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.9e-35 152.5 101 79.2
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.9e-35 152.5 101 81.2
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.9e-35 152.5 106 76.4
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.5e-35 152.1 101 79.2
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 3.3e-35 151.8 102 78.4
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 3.3e-35 151.8 109 72.5
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 4.3e-35 151.4 102 77.5
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 5.6e-35 151.0 102 76.5
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 7.3e-35 150.6 101 80.2
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 7.3e-35 150.6 102 78.4
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 7.3e-35 150.6 101 76.2
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 9.5e-35 150.2 97 82.5
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.2e-34 149.8 101 76.2
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.6e-34 149.4 100 78.0
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.6e-34 149.4 101 78.2
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.1e-34 149.1 96 79.2
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.8e-34 148.7 97 80.4
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.8e-34 148.7 97 80.4
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 2.8e-34 148.7 106 73.6
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 4.7e-34 147.9 100 78.0
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 6.2e-34 147.5 96 82.3
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 6.2e-34 147.5 99 74.7
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 8.1e-34 147.1 101 74.3
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.1e-33 146.7 103 72.8
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.4e-33 146.4 103 72.8
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.4e-33 146.4 103 72.8
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.8e-33 146.0 103 72.8
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 2.3e-33 145.6 102 74.5
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.0e-33 144.8 103 71.8
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 4.0e-33 144.8 106 71.7
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 6.8e-33 144.1 101 76.2
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 1.5e-32 142.9 103 71.8
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 2.0e-32 142.5 114 69.3
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.0e-32 142.5 99 72.7
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.6e-32 142.1 102 72.5
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.6e-32 142.1 99 71.7
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.6e-32 142.1 99 71.7
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.6e-32 142.1 99 71.7
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 2.6e-32 142.1 100 75.0
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 2.6e-32 142.1 105 72.4
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.4e-32 141.7 99 71.7
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 4.4e-32 141.4 100 73.0
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 5.8e-32 141.0 100 73.0
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 5.8e-32 141.0 100 73.0
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 5.8e-32 141.0 100 73.0
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 7.6e-32 140.6 100 74.0
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 7.6e-32 140.6 95 77.9
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 7.6e-32 140.6 102 71.6
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.7e-31 139.4 100 72.0
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.7e-31 139.4 111 67.6
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 2.2e-31 139.0 100 72.0
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 3.8e-31 138.3 108 68.5
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 4.9e-31 137.9 100 72.0
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 6.4e-31 137.5 102 69.6
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.9e-30 136.0 100 71.0
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 3.2e-30 135.2 103 69.9
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 2.7e-29 132.1 99 67.7
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 7.8e-29 130.6 112 62.5
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 2.3e-28 129.0 77 85.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.5e-27 126.3 105 62.9
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.9e-27 125.9 83 79.5
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 7.3e-27 124.0 96 66.7
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.4e-25 119.0 101 63.4
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-23 112.8 75 76.0
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.7e-23 112.8 102 59.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 6.4e-23 110.9 95 61.1
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.2e-22 108.6 112 53.6
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 4.6e-21 104.8 101 55.4
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.3e-20 103.2 101 59.4
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.3e-20 103.2 102 54.9
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 3.0e-20 102.1 70 75.7
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 8.1e-18 94.0 90 54.4
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.1e-17 93.6 104 56.7
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.4e-17 93.2 102 53.9
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 6.9e-17 90.9 71 67.6
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 6.9e-17 90.9 71 67.6
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 3.9e-12 75.1 70 64.3
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 8.7e-12 73.9 83 56.6
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 8.7e-12 73.9 83 56.6
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.1e-09 67.0 52 67.3


User provided reference genes

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