Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 0.0e+00 1687.5 838 100.0
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.0e-275 952.6 872 58.6
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 6.4e-253 877.9 845 57.6
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.0e-250 870.5 867 55.7
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.6e-250 867.5 867 55.6
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 9.5e-249 864.0 888 53.0
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 8.0e-248 860.9 866 53.5
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.5e-246 856.7 859 54.1
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.9e-245 852.4 866 53.2
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.1e-243 846.3 881 51.8
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.5e-243 845.5 882 52.5
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.0e-242 844.0 866 53.0
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.1e-240 834.3 880 52.5
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 5.2e-239 831.6 872 52.3
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.8e-238 828.2 844 53.8
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 2.9e-237 825.9 876 51.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.2e-236 822.4 883 52.7
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 7.3e-233 811.2 878 50.6
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.8e-231 806.6 871 50.6
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 8.9e-231 804.3 876 50.7
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.2e-230 803.9 899 50.3
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 7.6e-230 801.2 862 51.4
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.3e-229 800.4 806 54.7
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.2e-229 799.7 899 49.9
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 7.1e-228 794.7 883 49.7
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.6e-227 793.5 904 49.9
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 3.5e-227 792.3 878 48.9
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 9.6e-225 784.3 868 51.7
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 6.2e-224 781.6 876 49.8
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.4e-222 775.8 880 50.2
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.3e-221 773.9 866 49.4
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.9e-221 772.7 885 49.7
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 4.2e-220 768.8 885 49.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.0e-218 764.2 876 48.9
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.3e-218 763.1 863 49.1
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.3e-216 757.3 877 47.2
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.1e-216 756.5 862 47.7
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 2.0e-214 750.0 852 49.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 2.6e-214 749.6 868 48.4
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 9.9e-214 747.7 838 48.9
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 9.9e-214 747.7 864 47.8
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.9e-213 746.1 864 47.7
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 6.4e-213 745.0 898 47.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.9e-212 743.4 845 48.6
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 5.4e-212 741.9 868 47.8
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 7.9e-211 738.0 879 48.4
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-210 737.3 868 47.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.6e-208 730.3 871 46.7
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.6e-208 730.3 881 48.1
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 3.1e-207 726.1 845 47.9
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 9.0e-207 724.5 889 47.2
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.5e-204 716.5 869 47.9
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-204 716.5 867 47.3
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 4.2e-204 715.7 893 47.6
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.1e-204 714.9 959 45.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 9.3e-204 714.5 907 47.0
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.2e-203 714.1 910 46.3
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.1e-203 713.4 871 47.6
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.1e-203 713.4 871 47.6
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.3e-202 710.7 672 56.2
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.9e-201 706.8 914 46.3
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 4.3e-201 705.7 908 46.3
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 5.3e-199 698.7 908 45.8
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 1.7e-197 693.7 886 45.7
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.5e-196 689.9 834 47.0
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 3.2e-196 689.5 853 46.1
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.1e-195 686.8 834 46.5
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.7e-195 686.4 832 46.2
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 6.1e-195 685.3 855 45.7
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.8e-194 683.7 879 44.9
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.5e-193 680.6 877 44.9
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 7.4e-193 678.3 839 47.3
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 4.8e-192 675.6 845 46.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 4.8e-192 675.6 845 46.3
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.1e-191 674.5 831 45.8
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.1e-191 674.5 851 47.1
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 9.0e-191 671.4 882 45.5
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 9.0e-191 671.4 878 44.3
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.4e-190 669.5 831 45.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 3.8e-189 666.0 916 44.7
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.9e-188 663.7 845 45.2
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 5.5e-188 662.1 832 46.5
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.6e-187 660.6 831 46.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.8e-186 654.8 844 46.0
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 2.0e-185 653.7 859 45.1
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 2.0e-185 653.7 825 46.8
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 5.7e-185 652.1 607 57.2
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 9.7e-185 651.4 924 43.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.8e-184 649.8 867 45.8
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.1e-183 647.9 831 45.7
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.1e-183 647.9 831 45.7
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 3.4e-182 642.9 838 45.3
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 3.4e-182 642.9 875 44.6
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.4e-180 637.5 860 44.2
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 4.7e-179 632.5 837 44.6
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-176 624.0 734 47.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.1e-175 619.4 747 47.3
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 7.0e-175 618.6 854 43.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 6.5e-173 612.1 847 44.7
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 2.3e-170 603.6 750 46.5
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 6.3e-168 595.5 910 42.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 6.5e-165 585.5 786 42.5
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 6.1e-163 578.9 739 45.5
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.8e-157 559.7 620 49.7
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 3.8e-157 559.7 870 39.8
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.1e-155 553.9 682 48.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 5.2e-146 522.7 691 43.8
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.5e-145 518.8 608 49.3
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.0e-142 510.8 555 50.8
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.7e-142 510.4 864 39.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 3.9e-141 506.5 771 39.8
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.4e-137 493.0 662 45.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.6e-132 476.1 626 44.4
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.2e-131 474.9 566 46.5
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.9e-128 463.8 649 42.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 2.5e-116 424.1 516 46.5
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.4e-105 387.1 632 38.8
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 1.3e-99 368.6 373 51.7
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 2.9e-96 357.5 549 42.3
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.5e-94 350.5 541 42.3
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 4.5e-89 333.6 550 37.6
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.4e-82 312.0 482 40.9
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.1e-82 310.8 494 40.3
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 6.1e-78 296.6 376 44.9
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.8e-75 287.0 516 34.9
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.8e-74 285.0 976 28.8
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 3.9e-69 267.3 290 49.7
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 2.6e-65 254.6 681 28.9
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 7.7e-65 253.1 612 30.9
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.2e-63 247.3 232 58.2
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 7.2e-63 246.5 186 67.2
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 7.2e-63 246.5 288 50.7
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 1.0e-61 242.7 323 44.3
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 2.4e-58 231.5 202 61.9
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.8e-53 215.3 190 59.5
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.0e-48 197.2 221 49.8
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 9.4e-47 193.0 171 62.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 3.4e-44 184.5 244 46.7
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 5.4e-42 177.2 178 53.9
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 4.5e-41 174.1 201 51.2
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 4.5e-41 174.1 158 55.7
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 5.5e-39 167.2 120 68.3
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 6.1e-38 163.7 164 56.7
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 8.0e-38 163.3 139 61.2
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 5.7e-36 157.1 164 54.9
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.2e-35 155.2 161 52.8
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.1e-34 152.9 272 38.2
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.4e-34 150.6 264 38.3
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 6.6e-32 143.7 152 55.3
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 8.6e-32 143.3 115 60.0
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-31 142.9 115 60.0
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 6.1e-30 137.1 152 53.9
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 6.8e-29 133.7 152 52.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 8.9e-29 133.3 146 53.4
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-28 132.9 99 64.6
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.0e-28 132.1 96 66.7
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.0e-28 132.1 132 49.2
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.2e-27 128.6 97 66.0
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 3.7e-27 127.9 437 25.9
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 6.4e-27 127.1 1100 22.4
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 7.8e-25 120.2 195 39.0
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 5.2e-21 107.5 363 25.9
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 3.7e-19 101.3 68 69.1
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.6e-17 94.4 99 46.5
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.5e-15 88.6 90 61.1
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.5e-15 86.7 83 56.6
Cfa027026 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.6e-14 85.9 462 26.0
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-14 85.5 71 63.4
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.1e-13 83.2 118 48.3
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.3e-13 82.0 212 34.4
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 2.3e-13 82.0 161 34.2
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 5.2e-13 80.9 63 68.3
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.3e-11 73.6 52 69.2
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.9e-10 72.4 320 24.1
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.4e-10 72.0 64 60.9
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.4e-10 70.9 58 56.9
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.1e-10 70.5 101 37.6
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.5e-09 68.2 49 65.3
Lsat_1_v5_gn_8_112581 Lactuca sativa HOM05D003758 ORTHO05D004344 1.7e-08 65.9 98 36.7
SalBow3G2203 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.1e-07 63.2 35 82.9
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 3.3e-07 61.6 234 23.5


User provided reference genes

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