Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu049866.1 Olea europaea HOM05D001065 ORTHO05D035018 4.6e-40 167.5 91 100.0
MSTRG.24517 Avicennia marina HOM05D001065 ORTHO05D003103 1.5e-22 109.4 91 68.1
SalBow6G3244 Salvia bowleyana HOM05D001065 ORTHO05D003103 3.3e-22 108.2 93 64.5
Migut.N02988 Erythranthe guttata HOM05D001065 ORTHO05D003103 1.3e-21 106.3 80 73.8
Oeu039084.1 Olea europaea HOM05D001065 ORTHO05D035018 1.2e-19 99.8 79 74.7
SGA_v2.0_scaffold220G42645 Striga asiatica HOM05D001065 ORTHO05D003103 1.7e-18 95.9 90 57.8
Cc10_g00250 Coffea canephora HOM05D001065 ORTHO05D003103 3.8e-18 94.7 91 59.3
Dinv13759 Davidia involucrata HOM05D001065 ORTHO05D003103 5.5e-17 90.9 92 56.5
CAN.G1330.12 Capsicum annuum HOM05D001065 ORTHO05D003103 6.1e-16 87.4 87 56.3
Nitab4.5_0001756g0010 Nicotiana tabacum HOM05D001065 ORTHO05D003103 1.4e-15 86.3 87 55.2
Hma1.2p1_0489F.1_g164120 Hydrangea macrophylla HOM05D001065 ORTHO05D003103 8.8e-15 83.6 92 55.4
PGSC0003DMG400009998 Solanum tuberosum HOM05D001065 ORTHO05D003103 8.8e-15 83.6 87 55.2
CSS0037280 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D003103 1.1e-14 83.2 92 53.3
Actinidia17078 Actinidia chinensis HOM05D001065 ORTHO05D003103 1.9e-14 82.4 84 57.1
Sopen04g036400 Solanum pennellii HOM05D001065 ORTHO05D003103 2.5e-14 82.0 87 54.0
TWI36G1461 Tripterygium wilfordii HOM05D001065 ORTHO05D003103 3.3e-14 81.6 92 54.3
Lj4A811T124 Lonicera japonica HOM05D001065 ORTHO05D003103 5.7e-14 80.9 89 53.9
unitig_578.g16240 Utricularia gibba HOM05D001065 ORTHO05D003103 5.7e-14 80.9 80 56.2
DCAR_023023 Daucus carota HOM05D001065 ORTHO05D035018 7.4e-14 80.5 89 50.6
PGR083G0789 Punica granatum HOM05D001065 ORTHO05D003103 7.4e-14 80.5 91 54.9
GSVIVG01013428001 Vitis vinifera HOM05D001065 ORTHO05D003103 1.3e-13 79.7 93 53.8
Peaxi162Scf00385g00010 Petunia axillaris HOM05D001065 ORTHO05D003103 1.7e-13 79.3 94 53.2
CiPaw.07G133400 Carya illinoinensis HOM05D001065 ORTHO05D003103 2.2e-13 79.0 75 53.3
Lsat_1_v5_gn_9_48340 Lactuca sativa HOM05D001065 ORTHO05D003103 2.2e-13 79.0 73 60.3
Atru.chr13.59 Acer truncatum HOM05D001065 ORTHO05D003103 3.7e-13 78.2 82 54.9
Solyc04g082760.3 Solanum lycopersicum HOM05D001065 ORTHO05D003103 8.2e-13 77.0 87 51.7
Manes.18G001900 Manihot esculenta HOM05D001065 ORTHO05D003103 1.4e-12 76.3 92 51.1
Prupe.5G005400 Prunus persica HOM05D001065 ORTHO05D003103 1.8e-12 75.9 78 53.8
ECA232G0657 Erigeron canadensis HOM05D001065 ORTHO05D003103 2.4e-12 75.5 73 58.9
Ciclev10001069m.g Citrus clementina HOM05D001065 ORTHO05D003103 5.3e-12 74.3 91 50.5
Duzib041G0437 Durio zibethinus HOM05D001065 ORTHO05D003103 5.3e-12 74.3 80 53.8
Glyma.06G014400 Glycine max HOM05D001065 ORTHO05D003103 5.3e-12 74.3 84 48.8
vmacro21766 Vaccinium macrocarpon HOM05D001065 ORTHO05D003103 5.3e-12 74.3 82 53.7
QL02p015747 Quercus lobata HOM05D001065 ORTHO05D003103 6.9e-12 73.9 76 52.6
TAR376G1201 Trochodendron aralioides HOM05D001065 ORTHO05D003103 6.9e-12 73.9 84 50.0
Lalb_Chr11g0061371 Lupinus albus HOM05D001065 ORTHO05D003103 9.1e-12 73.6 72 56.9
Ca_15384_v3 Cicer arietinum L. HOM05D001065 ORTHO05D003103 1.5e-11 72.8 82 47.6
Eucgr.F01821 Eucalyptus grandis HOM05D001065 ORTHO05D003103 2.6e-11 72.0 89 52.8
Rhsim06G0003100 Rhododendron simsii HOM05D001065 ORTHO05D003103 4.5e-11 71.2 86 50.0
VMungo1309G2971 Vigna mungo HOM05D001065 ORTHO05D003103 4.5e-11 71.2 85 49.4
RcHm_v2.0_Chr5g0003401 Rosa chinensis HOM05D001065 ORTHO05D003103 5.9e-11 70.9 77 53.2
CANSAT78G2419 Cannabis sativa HOM05D001065 ORTHO05D003103 7.7e-11 70.5 91 47.3
Glyma.04G014400 Glycine max HOM05D001065 ORTHO05D003103 1.0e-10 70.1 75 52.0
Lj1g0025049 Lotus japonicus HOM05D001065 ORTHO05D003103 1.0e-10 70.1 82 50.0
Gohir.D05G180900 Gossypium hirsutum HOM05D001065 ORTHO05D003103 1.3e-10 69.7 70 51.4
Gorai.009G185900 Gossypium raimondii HOM05D001065 ORTHO05D003103 1.3e-10 69.7 70 51.4
Medtr6g053260 Medicago truncatula HOM05D000007 ORTHO05D003103 1.3e-10 69.7 77 50.6
Medtr3g116120 Medicago truncatula HOM05D001065 ORTHO05D003103 1.7e-10 69.3 77 50.6
arahy.Tifrunner.gnm1.ann1.W4A4ZK Arachis hypogaea HOM05D001065 ORTHO05D003103 5.0e-10 67.8 85 47.1
Gohir.A05G177500 Gossypium hirsutum HOM05D001065 ORTHO05D003103 5.0e-10 67.8 70 51.4
HanXRQChr09g0241911 Helianthus annuus HOM05D001065 ORTHO05D003103 5.0e-10 67.8 72 56.9
Aqoxy7G04038 Aquilegia oxysepala HOM05D001065 ORTHO05D003103 6.5e-10 67.4 89 47.2
Duzib116G0376 Durio zibethinus HOM05D001065 ORTHO05D003103 6.5e-10 67.4 91 47.3
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 8.5e-10 67.0 73 46.6
COL.COLO4_12297 Corchorus olitorius HOM05D001065 ORTHO05D003103 1.1e-09 66.6 91 47.3
CARHR127630 Cardamine hirsuta HOM05D001065 ORTHO05D003103 1.4e-09 66.2 83 49.4
Haze_22864 Corylus avellana HOM05D001065 ORTHO05D003103 1.4e-09 66.2 73 46.6
FvH4_3g02280 Fragaria vesca HOM05D001065 ORTHO05D003103 1.4e-09 66.2 77 50.6
FAN21G0065 Fragaria x ananassa HOM05D001065 ORTHO05D003103 1.4e-09 66.2 77 50.6
FAN21G0171 Fragaria x ananassa HOM05D001065 ORTHO05D003103 1.4e-09 66.2 77 50.6
Phvul.009G008500 Phaseolus vulgaris HOM05D001065 ORTHO05D003103 1.4e-09 66.2 75 50.7
Thecc.08G099700 Theobroma cacao HOM05D001065 ORTHO05D003103 1.4e-09 66.2 76 50.0
Medtr5g085170 Medicago truncatula HOM05D001065 ORTHO05D003103 2.5e-09 65.5 92 46.7
Zm00001eb206120 Zea mays HOM05D001065 ORTHO05D003103 2.5e-09 65.5 86 45.3
AL4G29280 Arabidopsis lyrata HOM05D001065 ORTHO05D003103 3.2e-09 65.1 75 50.7
arahy.Tifrunner.gnm1.ann1.L2XFJE Arachis hypogaea HOM05D001065 ORTHO05D003103 4.2e-09 64.7 75 52.0
Thhalv10016607m.g Eutrema salsugineum HOM05D001065 ORTHO05D003103 5.5e-09 64.3 71 52.1
TPR.G38238 Trifolium pratense HOM05D001065 ORTHO05D003103 5.5e-09 64.3 80 46.2
AT2G33610 Arabidopsis thaliana HOM05D001065 ORTHO05D003103 7.2e-09 63.9 75 50.7
BcaC02g07806 Brassica carinata HOM05D001065 ORTHO05D003103 1.2e-08 63.2 71 52.1
C04p63140 Brassica napus HOM05D001065 ORTHO05D003103 1.2e-08 63.2 71 52.1
Carub.0004s1524 Capsella rubella HOM05D001065 ORTHO05D003103 1.2e-08 63.2 75 48.0
BolC4t27786H Brassica oleracea HOM05D001065 ORTHO05D003103 2.1e-08 62.4 71 52.1
MD05G1344100 Malus domestica HOM05D001065 ORTHO05D003103 2.1e-08 62.4 89 43.8
Prupe.4G022300 Prunus persica HOM05D001065 ORTHO05D003103 2.1e-08 62.4 74 47.3
THA.LOC104806869 Tarenaya hassleriana HOM05D001065 ORTHO05D003103 2.1e-08 62.4 69 50.7
BraA04t18089Z Brassica rapa HOM05D001065 ORTHO05D003103 3.6e-08 61.6 71 50.7
Potri.002G004800 Populus trichocarpa HOM05D001065 ORTHO05D003103 3.6e-08 61.6 67 53.7
FAN25G2536 Fragaria x ananassa HOM05D001065 ORTHO05D003103 4.7e-08 61.2 77 48.1
Sc15g0004060 Simmondsia chinensis HOM05D001065 ORTHO05D003103 4.7e-08 61.2 82 42.7
BcaB06g28706 Brassica carinata HOM05D001065 ORTHO05D003103 7.9e-08 60.5 71 49.3
Sabra02G0003200 Salix brachista HOM05D001065 ORTHO05D003103 7.9e-08 60.5 67 52.2
Sed0018640 Sechium edule HOM05D001065 ORTHO05D003103 1.4e-07 59.7 65 55.4
Nn6g31623 Nelumbo nucifera HOM05D001065 ORTHO05D003103 1.8e-07 59.3 70 48.6
HPP92_013560 Vanilla planifolia HOM05D001065 ORTHO05D003103 2.3e-07 58.9 69 50.7
ClCG11G019090 Citrullus lanatus HOM05D001065 ORTHO05D003103 3.0e-07 58.5 60 55.0
MBI01_g28403_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D003103 3.0e-07 58.5 83 44.6
Psat5g008520 Pisum sativum HOM05D001065 ORTHO05D003103 3.0e-07 58.5 76 46.1
Os02g0194000 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D003103 3.9e-07 58.2 86 44.2
PSO541G2552 Papaver somniferum HOM05D001065 ORTHO05D003103 5.1e-07 57.8 82 43.9
PSO675G0227 Papaver somniferum HOM05D001065 ORTHO05D003103 5.1e-07 57.8 82 43.9
Sp4g15960 Schrenkiella parvula HOM05D001065 ORTHO05D003103 8.8e-07 57.0 68 48.5
Aa31LG9G13540 Aethionema arabicum HOM05D001065 ORTHO05D003103 3.3e-06 55.1 66 45.5
MD10G1320100 Malus domestica HOM05D001065 ORTHO05D003103 3.3e-06 55.1 99 37.4
CDE05G0552 Ceratophyllum demersum HOM05D001065 ORTHO05D003103 7.4e-06 53.9 83 44.6


User provided reference genes

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