Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.9e-276 954.5 461 100.0
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 4.2e-174 615.1 464 63.1
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.5e-171 606.7 463 62.4
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 5.4e-169 598.2 463 61.8
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.7e-168 595.9 462 61.9
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.1e-161 572.0 463 59.6
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.2e-160 570.5 465 58.5
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.2e-160 570.5 475 59.8
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.5e-158 562.8 459 59.0
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 7.3e-158 561.2 459 58.8
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 2.8e-157 559.3 460 57.2
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.0e-156 555.4 463 58.1
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 7.5e-155 551.2 462 58.0
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.3e-154 550.4 464 57.3
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.4e-153 547.0 461 57.5
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 3.2e-153 545.8 462 57.1
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.6e-149 533.5 407 63.4
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.5e-147 526.9 457 55.6
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.3e-143 513.1 461 55.1
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 3.0e-143 512.7 460 54.3
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.1e-142 510.8 461 53.1
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.9e-138 496.1 462 53.5
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 3.7e-138 495.7 464 52.8
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.0e-135 487.6 463 53.1
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 2.3e-135 486.5 454 51.8
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 5.1e-135 485.3 463 53.1
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.3e-134 482.6 456 52.2
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 2.8e-133 479.6 456 51.8
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 3.1e-132 476.1 543 45.1
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 6.8e-132 474.9 457 51.0
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.5e-131 473.8 487 50.5
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 2.0e-131 473.4 460 52.6
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 5.8e-131 471.9 424 53.1
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.7e-130 470.3 466 50.9
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.9e-130 468.8 456 52.0
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.6e-128 463.8 461 49.7
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 4.6e-128 462.2 441 53.3
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.7e-127 460.3 509 46.8
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 3.0e-127 459.5 460 51.7
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 4.7e-125 452.2 459 47.5
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 8.1e-125 451.4 458 47.6
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 8.9e-124 448.0 460 48.9
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 7.6e-123 444.9 460 48.0
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 2.4e-121 439.9 459 49.5
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 3.2e-121 439.5 462 46.5
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.1e-120 436.8 466 50.0
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 4.0e-116 422.5 465 46.5
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.4e-115 419.5 449 47.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.1e-113 414.5 456 46.3
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 7.9e-112 408.3 386 52.8
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.9e-110 403.7 459 46.0
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.5e-110 403.3 418 48.1
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.3e-110 402.9 474 45.4
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.6e-109 400.6 458 46.5
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.1e-109 400.2 465 45.2
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.1e-109 400.2 458 46.3
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.2e-109 398.7 458 46.1
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 6.2e-109 398.7 462 46.8
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 1.2e-107 394.4 471 46.7
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 9.9e-107 391.3 483 44.9
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.9e-106 389.8 381 53.0
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.9e-105 387.1 457 46.6
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-104 384.0 457 46.4
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-102 377.5 527 41.9
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.1e-100 371.3 393 47.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 2.6e-99 366.7 459 41.8
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 3.8e-98 362.8 385 51.4
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.1e-97 361.3 380 50.3
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-97 361.3 441 44.0
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.4e-97 360.9 471 41.2
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.4e-97 360.9 467 43.9
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 9.3e-97 358.2 464 42.9
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 4.8e-93 345.9 465 41.9
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.8e-93 345.9 465 41.9
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 6.3e-93 345.5 423 44.9
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 6.3e-93 345.5 464 42.2
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.4e-92 344.4 264 61.0
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.8e-92 344.0 468 41.2
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.4e-92 343.6 432 43.8
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.4e-92 343.6 465 42.2
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 3.4e-91 339.7 448 40.0
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.0e-90 338.2 449 40.1
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.8e-90 336.3 433 43.6
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.8e-90 336.3 466 41.4
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.2e-89 332.8 448 39.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.7e-88 330.1 463 41.9
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.1e-88 328.9 464 40.7
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 6.1e-88 328.9 456 40.1
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.3e-87 327.8 458 40.6
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.3e-87 327.8 470 38.9
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.3e-87 327.8 470 38.9
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.8e-87 327.4 463 40.4
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 2.3e-87 327.0 461 39.9
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 6.7e-87 325.5 454 39.4
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.5e-86 324.3 463 40.4
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.5e-86 324.3 500 38.4
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.5e-86 323.6 458 40.0
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.5e-86 323.6 466 39.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.3e-86 323.2 471 39.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.7e-86 322.4 492 38.8
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 9.7e-86 321.6 455 40.7
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.3e-85 321.2 455 40.9
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.6e-85 320.9 452 39.8
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.2e-85 320.5 460 38.0
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 2.2e-85 320.5 463 39.7
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 4.1e-84 316.2 456 39.5
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 6.9e-84 315.5 472 40.7
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 9.1e-84 315.1 472 38.8
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.4e-83 313.2 469 39.7
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.9e-83 312.4 466 39.7
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 5.9e-83 312.4 499 38.5
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 4.6e-80 302.8 457 39.6
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 6.1e-80 302.4 460 38.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.0e-79 301.6 390 43.1
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.4e-79 301.2 307 51.1
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.1e-78 298.1 455 37.8
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.1e-78 298.1 423 41.4
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 9.7e-78 295.0 461 39.3
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 9.7e-78 295.0 452 39.8
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 9.7e-78 295.0 461 39.3
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 9.7e-78 295.0 461 39.0
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.4e-76 290.4 452 39.6
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.4e-73 281.2 334 43.4
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 3.2e-73 280.0 454 36.8
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.4e-71 274.6 468 37.2
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.4e-71 274.6 490 35.3
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 6.7e-71 272.3 430 37.9
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 7.4e-70 268.9 309 46.9
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 9.7e-70 268.5 488 35.9
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 4.1e-68 263.1 317 45.7
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.2e-66 257.3 313 44.7
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.1e-65 255.0 355 40.0
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 4.2e-65 253.1 259 51.7
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 9.4e-65 251.9 428 37.6
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 2.1e-64 250.8 494 32.2
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.1e-64 250.8 256 50.4
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.8e-61 240.4 300 42.7
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.4e-60 238.0 306 42.2
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 2.9e-58 230.3 426 34.7
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.2e-56 224.9 510 32.7
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 2.1e-56 224.2 306 39.9
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.4e-47 194.9 196 50.5
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.8e-47 194.5 356 34.8
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.3e-45 188.3 251 41.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 7.0e-44 182.6 285 38.2
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 6.6e-42 176.0 293 38.9
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.6e-40 171.4 141 56.7
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.8e-40 170.6 201 46.8
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.4e-36 158.3 133 54.9
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 4.1e-36 156.8 175 44.6
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 3.2e-28 130.6 426 27.2
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 4.6e-27 126.7 197 36.0
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.2e-19 102.1 134 41.0
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 1.7e-18 98.2 84 56.0
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 7.3e-17 92.8 306 25.5
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.0e-14 84.7 127 36.2
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.6e-14 84.3 63 57.1
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.6e-14 84.3 110 43.6
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.2e-11 75.5 116 37.9
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.0e-11 73.2 82 40.2
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 4.3e-09 67.0 89 40.4
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 5.6e-09 66.6 103 40.8
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.4e-07 62.0 82 39.0
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 9.9e-06 55.8 60 45.0


User provided reference genes

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