Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 5.5e-80 300.8 143 100.0
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.8e-59 232.6 142 78.9
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.2e-53 213.4 141 70.2
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.5e-53 213.0 141 70.2
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 2.6e-53 212.2 142 69.0
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 3.3e-53 211.8 142 68.3
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 5.7e-53 211.1 140 70.0
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 9.7e-53 210.3 143 69.9
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 1.3e-52 209.9 142 66.9
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.3e-52 209.9 141 69.5
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.7e-52 209.5 141 68.8
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.7e-52 209.5 140 70.0
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.7e-52 209.5 142 67.6
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 2.2e-52 209.1 141 69.5
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.8e-52 208.8 142 69.0
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 3.7e-52 208.4 142 67.6
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 4.8e-52 208.0 141 68.1
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 4.8e-52 208.0 141 66.7
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.1e-51 206.8 142 68.3
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.4e-51 206.5 142 64.8
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.4e-51 206.5 142 66.9
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.8e-51 206.1 141 69.5
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.8e-51 206.1 142 68.3
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.4e-51 205.7 142 66.2
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 2.4e-51 205.7 142 66.2
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 3.1e-51 205.3 142 66.2
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 4.1e-51 204.9 142 66.2
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 7.0e-51 204.1 142 64.8
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 9.1e-51 203.8 142 65.5
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 9.1e-51 203.8 141 66.0
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 1.6e-50 203.0 142 64.8
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.6e-50 203.0 142 64.8
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.0e-50 202.6 142 67.6
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.0e-50 202.6 142 64.1
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 2.0e-50 202.6 142 64.1
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.0e-50 202.6 141 68.1
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 2.7e-50 202.2 139 69.1
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 2.7e-50 202.2 142 65.5
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 3.5e-50 201.8 142 63.4
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 3.5e-50 201.8 142 64.8
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.5e-50 201.8 142 63.4
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 4.5e-50 201.4 139 66.9
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 4.5e-50 201.4 142 64.1
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 4.5e-50 201.4 141 67.4
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 5.9e-50 201.1 142 64.8
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 5.9e-50 201.1 142 64.8
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.9e-50 201.1 142 65.5
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 7.7e-50 200.7 142 64.1
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.3e-49 199.9 141 66.7
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.3e-49 199.9 141 67.4
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.7e-49 199.5 142 63.4
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.7e-49 199.5 142 64.1
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.7e-49 199.5 142 64.1
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 2.2e-49 199.1 141 61.7
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 2.2e-49 199.1 142 62.7
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.9e-49 198.7 142 64.8
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.9e-49 198.7 142 63.4
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 3.8e-49 198.4 141 66.7
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 5.0e-49 198.0 138 65.9
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 5.0e-49 198.0 142 63.4
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 6.5e-49 197.6 142 62.0
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.5e-49 197.2 142 61.3
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.1e-48 196.8 142 64.1
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.2e-48 195.3 141 62.4
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 4.2e-48 194.9 140 63.6
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 7.2e-48 194.1 142 62.7
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 9.4e-48 193.7 142 62.0
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 9.4e-48 193.7 142 60.6
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.2e-47 193.4 141 63.8
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.2e-47 193.4 142 62.0
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.2e-47 193.4 140 63.6
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 2.1e-47 192.6 141 61.0
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.7e-47 192.2 142 64.8
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 4.7e-47 191.4 142 61.3
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 6.1e-47 191.0 142 61.3
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 8.0e-47 190.7 147 60.5
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.0e-46 190.3 142 61.3
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.3e-46 189.1 142 64.8
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.3e-46 189.1 142 62.0
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 5.2e-46 188.0 141 63.1
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 6.8e-46 187.6 141 59.6
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.8e-46 187.2 142 59.9
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.5e-45 186.4 142 57.0
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 2.0e-45 186.0 142 54.9
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 2.0e-45 186.0 142 58.5
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 2.6e-45 185.7 142 55.6
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.6e-45 185.7 142 59.2
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 3.4e-45 185.3 142 58.5
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 5.7e-45 184.5 142 63.4
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 5.7e-45 184.5 142 57.7
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 7.5e-45 184.1 147 59.9
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 9.8e-45 183.7 142 55.6
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 9.8e-45 183.7 142 58.5
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.3e-44 183.3 142 62.0
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.7e-44 183.0 142 55.6
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.7e-44 181.8 143 60.8
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 3.7e-44 181.8 156 56.4
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 4.8e-44 181.4 142 59.9
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 4.8e-44 181.4 142 54.9
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 4.8e-44 181.4 142 57.7
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 8.3e-44 180.6 142 60.6
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.1e-43 180.3 143 60.1
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 3.1e-43 178.7 141 59.6
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 4.1e-43 178.3 142 54.2
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 4.1e-43 178.3 142 54.2
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 4.1e-43 178.3 142 54.2
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 5.4e-43 177.9 142 54.2
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 5.4e-43 177.9 142 54.2
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 7.0e-43 177.6 142 59.9
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 7.0e-43 177.6 142 54.2
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 2.7e-42 175.6 142 57.7
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 2.7e-42 175.6 142 60.6
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 7.7e-42 174.1 140 57.9
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 1.0e-41 173.7 142 52.8
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 5.0e-41 171.4 142 54.9
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 6.5e-41 171.0 142 52.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.5e-40 169.9 142 52.1
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 1.5e-40 169.9 141 56.0
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 1.5e-40 169.9 140 55.0
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.2e-40 167.5 175 51.4
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.2e-40 167.5 175 51.4
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 4.7e-39 164.9 140 54.3
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 4.7e-39 164.9 142 59.2
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.8e-38 162.9 142 50.7
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 4.4e-37 158.3 122 61.5
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 2.4e-35 152.5 130 59.2
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 7.0e-35 151.0 138 53.6
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 1.2e-34 150.2 155 49.0
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 4.5e-34 148.3 121 58.7
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.3e-32 142.1 139 46.8
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 7.3e-32 141.0 139 46.8
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 5.2e-30 134.8 95 58.9
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 4.9e-28 128.3 139 45.3
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.2e-26 123.6 105 52.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 1.0e-25 120.6 137 38.7
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 6.6e-25 117.9 67 82.1
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.5e-24 115.9 139 38.8
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 9.5e-24 114.0 69 73.9
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 4.0e-22 108.6 135 37.8
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 5.8e-21 104.8 104 48.1
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 2.9e-20 102.4 131 39.7
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.4e-20 101.3 142 38.7
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 1.4e-19 100.1 49 91.8
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 3.2e-19 99.0 135 34.1
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 6.0e-18 94.7 55 76.4
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.1e-16 90.5 72 54.2
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 4.3e-16 88.6 72 51.4
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 8.9e-14 80.9 71 52.1
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 2.6e-13 79.3 65 55.4
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.7e-12 76.6 49 65.3
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 6.4e-12 74.7 49 67.3
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 3.2e-11 72.4 60 50.0
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 4.1e-11 72.0 138 32.6
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 5.6e-08 61.6 38 63.2
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.1e-06 57.4 71 42.3


User provided reference genes

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