Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 4.7e-37 157.5 90 100.0
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 2.7e-32 141.7 89 89.9
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 1.5e-30 136.0 82 93.9
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 5.6e-30 134.0 88 88.6
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 9.5e-30 133.3 82 93.9
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-29 132.5 82 92.7
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 1.6e-29 132.5 82 92.7
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 1.6e-29 132.5 82 92.7
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 3.6e-29 131.3 82 91.5
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 4.7e-29 131.0 85 89.4
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 4.7e-29 131.0 82 92.7
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 4.7e-29 131.0 82 92.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.2e-29 130.6 88 86.4
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 1.1e-28 129.8 82 92.7
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.8e-28 129.0 82 89.0
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 3.1e-28 128.3 82 90.2
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 4.0e-28 127.9 82 91.5
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 5.2e-28 127.5 82 89.0
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 6.8e-28 127.1 77 94.8
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 1.2e-27 126.3 82 91.5
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.2 78 92.3
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 4.4e-27 124.4 77 93.5
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 4.4e-27 124.4 82 74.4
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 7.5e-27 123.6 81 87.7
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 7.5e-27 123.6 80 91.2
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 1.7e-26 122.5 82 90.2
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 3.7e-26 121.3 82 69.5
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 1.1e-25 119.8 77 90.9
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 7.1e-25 117.1 82 87.8
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 1.6e-24 115.9 81 86.4
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 1.6e-24 115.9 81 86.4
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.1e-24 115.5 81 85.2
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.1e-24 115.5 81 85.2
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 2.7e-24 115.2 82 81.7
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 1.0e-23 113.2 80 83.8
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.3e-23 112.8 72 91.7
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.7e-23 112.5 81 84.0
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 111.3 76 88.2
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 111.3 76 88.2
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.9e-23 111.3 76 88.2
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.9e-23 111.3 76 88.2
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 111.3 76 88.2
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 8.6e-23 110.2 83 65.1
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 1.9e-22 109.0 71 88.7
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 1.9e-22 109.0 82 63.4
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 3.3e-22 108.2 53 88.7
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 3.3e-22 108.2 53 88.7
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 3.3e-22 108.2 53 88.7
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.7e-21 104.4 69 71.0
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 6.2e-21 104.0 70 90.0
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.4e-20 102.8 78 80.8
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.4e-20 102.8 69 88.4
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.4e-20 102.8 69 88.4
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.4e-20 102.8 69 88.4
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 1.8e-20 102.4 54 81.5
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 6.8e-20 100.5 82 80.5
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 8.9e-20 100.1 46 93.5
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 2.0e-19 99.0 46 93.5
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 2.0e-19 99.0 46 93.5
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 2.0e-19 99.0 46 93.5
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.0e-19 99.0 46 93.5
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 2.0e-19 99.0 46 93.5
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 2.0e-19 99.0 46 93.5
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 2.0e-19 99.0 46 93.5
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 3.8e-18 94.7 82 61.0
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 3.8e-18 94.7 82 61.0
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 3.8e-18 94.7 69 81.2
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 3.8e-18 94.7 81 58.0
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 1.4e-17 92.8 82 61.0
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 1.4e-17 92.8 82 61.0
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 1.4e-17 92.8 82 61.0
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 1.9e-17 92.4 46 89.1
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 2.4e-17 92.0 46 89.1
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 9.2e-17 90.1 83 57.8
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 6.0e-16 87.4 40 92.5
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 2.3e-15 85.5 38 94.7
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 8.1e-13 77.0 54 66.7
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 1.1e-12 76.6 57 64.9
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 1.4e-12 76.3 55 65.5
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 1.8e-12 75.9 55 65.5
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 4.0e-12 74.7 55 65.5
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 6.9e-12 73.9 55 67.3
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 2.6e-11 72.0 35 88.6
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 4.4e-11 71.2 33 90.9
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 7.6e-11 70.5 55 61.8
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-10 69.3 55 61.8
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.9e-10 68.6 55 60.0
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 2.9e-10 68.6 28 100.0
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 1.4e-09 66.2 52 61.5
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 6.0e-08 60.8 54 53.7
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 1.7e-07 59.3 47 57.4
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.9e-06 55.8 29 79.3
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 2.5e-06 55.5 49 57.1
Medtr4g026420 Medicago truncatula HOM05D001200 ORTHO05D009713 7.3e-06 53.9 77 45.5


User provided reference genes

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