Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 0.0e+00 1577.4 808 100.0
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 0.0e+00 1114.4 807 69.9
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 0.0e+00 1111.7 808 70.5
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 0.0e+00 1107.4 809 70.6
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 0.0e+00 1087.4 808 69.8
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 0.0e+00 1086.6 806 68.5
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 0.0e+00 1081.6 794 71.4
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 3.0e-308 1061.6 780 69.0
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 6.7e-308 1060.4 807 67.4
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 2.6e-304 1048.5 807 67.3
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 4.5e-304 1047.7 807 66.5
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 4.2e-302 1041.2 799 67.0
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 7.1e-302 1040.4 805 66.6
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.6e-301 1039.3 807 67.3
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 6.1e-301 1037.3 807 66.5
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.0e-300 1036.6 807 67.2
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 3.0e-300 1035.0 810 66.3
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 1.1e-297 1026.5 806 66.5
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 5.3e-297 1024.2 807 65.8
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 2.6e-296 1021.9 798 66.3
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 8.5e-295 1016.9 806 65.1
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 5.5e-294 1014.2 810 64.3
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 2.7e-293 1011.9 789 65.5
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.7e-292 1007.3 806 63.8
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 1.1e-291 1006.5 824 64.4
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.1e-291 1006.5 789 65.7
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 5.7e-291 1004.2 800 64.8
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.3e-290 1003.0 806 64.4
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.8e-289 999.2 789 64.3
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 3.4e-288 995.0 761 66.9
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.3e-287 993.0 808 64.1
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.2e-287 992.3 788 66.0
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.8e-287 991.5 789 64.8
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.1e-286 989.9 811 64.6
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 6.1e-285 984.2 761 66.6
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.6e-283 978.8 789 65.1
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.8e-281 972.6 813 63.6
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.8e-281 972.6 790 63.0
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.8e-281 972.6 789 64.1
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.2e-280 969.9 806 62.5
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 3.5e-280 968.4 798 62.8
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.1e-278 963.4 800 63.1
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 4.2e-278 961.4 789 63.2
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 9.4e-278 960.3 809 62.2
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 6.7e-276 954.1 807 62.7
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 8.8e-276 953.7 792 61.7
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 3.7e-274 948.3 820 62.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.3e-274 947.6 789 62.2
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 4.1e-273 944.9 808 60.1
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.1e-273 943.7 789 61.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 9.1e-273 943.7 822 62.8
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.6e-272 942.2 800 62.4
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.5e-272 941.8 789 62.1
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.9e-271 938.7 789 61.3
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.8e-271 938.3 808 59.0
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 3.8e-271 938.3 798 62.0
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 6.5e-271 937.6 801 62.0
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.2e-269 933.3 805 59.5
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 3.6e-269 931.8 794 60.1
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 4.0e-268 928.3 811 60.0
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 5.7e-267 924.5 811 60.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 9.7e-267 923.7 788 61.0
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.7e-267 923.7 838 58.2
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 2.2e-266 922.5 811 59.8
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.1e-265 920.2 792 61.0
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 5.9e-264 914.4 790 60.8
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.7e-263 912.9 701 67.6
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.7e-263 912.9 797 60.1
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 8.5e-263 910.6 790 60.8
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 1.5e-262 909.8 794 59.2
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.5e-259 899.8 790 59.6
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 1.5e-259 899.8 790 59.7
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.4e-257 892.5 804 58.7
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 7.0e-257 891.0 803 58.9
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 7.0e-257 891.0 790 59.7
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 9.1e-257 890.6 789 59.2
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.2e-256 890.2 801 58.9
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 5.9e-256 887.9 790 59.1
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 7.7e-256 887.5 776 60.7
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.8e-255 885.2 791 59.3
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 2.5e-254 882.5 803 58.3
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 3.3e-254 882.1 790 58.9
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 5.5e-254 881.3 809 58.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.7e-250 869.8 794 59.6
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.7e-250 869.8 794 59.6
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.7e-250 869.8 794 59.6
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 5.4e-249 864.8 818 56.8
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-248 863.6 809 58.1
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.6e-248 863.2 809 58.1
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.3e-246 855.5 792 57.4
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 8.3e-242 840.9 797 57.6
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.1e-238 830.5 790 56.6
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.2e-236 821.6 651 66.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.2e-236 821.6 651 66.2
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.3e-231 806.2 802 55.2
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 2.1e-229 799.7 626 67.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 3.3e-222 775.8 790 54.7
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 6.2e-205 718.4 792 52.4
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 6.7e-191 671.8 567 61.4
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.8e-189 666.4 645 56.0
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 2.2e-181 640.2 469 72.1
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 5.9e-179 632.1 455 69.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 7.2e-177 625.2 846 45.3
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.1e-169 601.3 467 67.2
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 2.5e-169 600.1 699 49.6
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 7.0e-164 582.0 465 64.1
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 5.2e-159 565.8 470 61.7
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.6e-158 563.5 414 69.8
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.3e-158 563.1 471 62.4
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 3.7e-157 559.7 476 61.6
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.7e-154 550.8 495 58.8
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.9e-153 547.4 456 62.7
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 2.1e-152 543.9 742 44.9
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 4.7e-152 542.7 458 61.6
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 4.7e-152 542.7 458 61.6
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.6e-150 537.0 458 61.6
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.2e-145 519.6 526 52.5
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 4.2e-145 519.6 455 60.4
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.0e-143 515.0 453 60.9
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 7.0e-140 502.3 455 58.7
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.7e-139 500.4 454 58.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.1e-137 495.0 473 57.7
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 5.6e-137 492.7 449 57.9
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 2.1e-136 490.7 454 57.7
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.1e-136 489.2 454 58.1
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 2.0e-134 484.2 748 40.6
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 2.2e-133 480.7 709 43.0
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.7e-130 471.1 752 41.1
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.3e-130 470.7 452 57.3
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.0e-127 461.8 465 53.3
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.8e-127 461.1 472 54.7
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.3e-125 454.9 450 53.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 2.4e-124 450.7 449 53.9
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 5.4e-124 449.5 449 54.3
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.2e-123 448.4 449 54.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.6e-113 412.9 295 71.2
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 2.6e-110 404.1 457 50.1
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.3e-101 375.2 315 61.0
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 9.0e-95 352.4 657 38.1
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 7.1e-92 342.8 464 43.1
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.3e-85 322.0 231 74.5
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.7e-83 314.3 273 63.4
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.0e-74 285.8 197 76.1
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-69 268.5 162 84.0
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-69 268.5 162 84.0
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 5.0e-61 240.4 798 28.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 2.5e-60 238.0 358 39.7
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 5.0e-53 213.8 147 69.4
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 2.3e-50 204.9 362 38.7
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 2.8e-48 198.0 145 64.8
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 4.8e-48 197.2 482 30.1
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 8.5e-45 186.4 137 62.8
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.0e-26 124.8 90 61.1
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 8.8e-26 123.2 155 40.6
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.7e-25 120.6 155 40.0
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.4e-17 94.7 93 47.3
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.4e-17 94.4 95 58.9
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 8.3e-16 90.1 80 47.5
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.0e-09 68.9 54 55.6
Oeu025423.1 Olea europaea HOM05D002938 ORTHO05D002074 2.0e-06 58.9 44 72.7


User provided reference genes

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