Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.3e-38 161.8 83 100.0
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 9.4e-16 86.7 75 62.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 9.4e-16 86.7 81 58.0
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.2e-15 86.3 76 63.2
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.2e-15 86.3 48 89.6
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.6e-15 85.9 75 64.0
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.6e-15 85.9 73 64.4
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 87.5
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 87.5
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 89.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.1e-15 85.5 73 65.8
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 87.5
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 87.5
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 2.1e-15 85.5 49 85.7
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 87.5
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 87.5
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 2.1e-15 85.5 48 87.5
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.7e-15 85.1 48 87.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.7e-15 84.3 48 85.4
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 4.7e-15 84.3 48 85.4
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 6.1e-15 84.0 73 63.0
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 8.0e-15 83.6 74 63.5
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 8.0e-15 83.6 47 87.2
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 8.0e-15 83.6 48 85.4
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 8.0e-15 83.6 48 87.5
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.0e-14 83.2 61 70.5
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.0e-14 83.2 48 87.5
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 1.0e-14 83.2 68 67.6
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 1.4e-14 82.8 48 83.3
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.4e-14 82.8 73 60.3
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.4e-14 82.8 48 87.5
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.4e-14 82.8 48 85.4
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.8e-14 82.4 75 61.3
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.8e-14 82.4 74 60.8
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.8e-14 82.4 74 62.2
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.8e-14 82.4 74 60.8
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.8e-14 82.4 48 87.5
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.3e-14 82.0 48 83.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.3e-14 82.0 48 85.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 3.0e-14 81.6 74 60.8
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 3.0e-14 81.6 48 83.3
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 4.0e-14 81.3 73 61.6
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.2e-14 80.9 49 83.7
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.2e-14 80.9 49 83.7
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.2e-14 80.9 49 83.7
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 5.2e-14 80.9 48 83.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 5.2e-14 80.9 48 83.3
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 5.2e-14 80.9 74 60.8
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 6.8e-14 80.5 51 82.4
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 8.8e-14 80.1 48 83.3
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 8.8e-14 80.1 48 83.3
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 8.8e-14 80.1 48 83.3
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.8e-14 80.1 74 60.8
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 8.8e-14 80.1 73 61.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 8.8e-14 80.1 48 81.2
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 1.2e-13 79.7 49 77.6
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.2e-13 79.7 48 83.3
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.2e-13 79.7 48 81.2
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.2e-13 79.7 48 83.3
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.5e-13 79.3 49 81.6
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.5e-13 79.3 69 60.9
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.5e-13 79.3 76 59.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.5e-13 79.3 76 59.2
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.5e-13 79.3 76 59.2
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.5e-13 79.3 48 85.4
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.5e-13 79.3 48 85.4
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.5e-13 79.3 82 58.5
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.6e-13 78.6 48 81.2
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.6e-13 78.6 48 81.2
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.6e-13 78.6 48 81.2
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.6e-13 78.6 48 81.2
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.4e-13 78.2 48 79.2
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 3.4e-13 78.2 48 79.2
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 4.4e-13 77.8 69 59.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 4.4e-13 77.8 48 81.2
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 4.4e-13 77.8 69 58.0
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 4.4e-13 77.8 69 59.4
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 4.4e-13 77.8 48 81.2
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 4.4e-13 77.8 69 58.0
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 4.4e-13 77.8 48 83.3
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 4.4e-13 77.8 48 77.1
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 7.5e-13 77.0 61 70.5
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 7.5e-13 77.0 48 79.2
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 7.5e-13 77.0 69 60.9
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 7.5e-13 77.0 48 79.2
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 9.8e-13 76.6 63 58.7
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 9.8e-13 76.6 81 56.8
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 9.8e-13 76.6 51 74.5
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.3e-12 76.3 45 82.2
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.7e-12 75.9 81 56.8
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-12 75.9 69 62.3
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-12 75.9 69 62.3
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.7e-12 75.9 69 62.3
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.2e-12 75.5 48 81.2
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.2e-12 75.5 48 77.1
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 2.2e-12 75.5 61 65.6
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 3.7e-12 74.7 79 55.7
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 3.7e-12 74.7 79 55.7
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.7e-12 74.7 59 71.2
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 4.8e-12 74.3 79 55.7
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 4.8e-12 74.3 79 55.7
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 4.8e-12 74.3 48 79.2
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 4.8e-12 74.3 56 66.1
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 6.3e-12 73.9 48 79.2
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 8.3e-12 73.6 61 68.9
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 8.3e-12 73.6 48 77.1
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 8.3e-12 73.6 48 79.2
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 8.3e-12 73.6 45 80.0
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 8.3e-12 73.6 51 72.5
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.1e-11 73.2 44 84.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.1e-11 73.2 63 63.5
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.1e-11 73.2 48 75.0
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.1e-11 73.2 56 73.2
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.4e-11 72.8 48 79.2
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.8e-11 72.4 70 61.4
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.8e-11 72.4 48 77.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.4e-11 72.0 48 72.9
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 3.1e-11 71.6 48 75.0
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.1e-11 71.6 48 77.1
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.1e-11 71.6 56 71.4
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 7.7e-10 67.0 56 66.1
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.0e-09 66.6 59 57.6
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.9e-09 65.1 59 57.6
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.0e-09 64.3 59 55.9
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 5.0e-09 64.3 65 50.8
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 6.5e-09 63.9 48 68.8
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.1e-08 63.2 59 54.2
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.5e-08 62.0 82 45.1
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.2e-08 61.6 49 65.3
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 4.7e-07 57.8 50 70.0
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 8.0e-07 57.0 52 59.6
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.0e-06 56.6 82 46.3
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.4e-06 56.2 59 50.8
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.3e-06 55.5 73 46.6


User provided reference genes

Program Settings