Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 2070.8 976 100.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1683.3 963 81.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1680.6 979 80.4
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1680.6 974 80.3
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1671.4 979 79.6
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1650.2 978 79.3
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1648.6 977 78.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1644.0 979 79.0
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1644.0 977 77.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1642.9 973 79.3
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1641.7 977 78.2
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1638.6 978 78.4
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 981 79.1
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 980 78.3
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1635.5 977 78.8
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1634.8 974 79.2
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1633.6 978 78.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1633.2 974 78.0
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1633.2 974 78.9
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1630.9 979 77.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1627.8 980 78.4
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1625.5 968 77.8
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1625.1 979 77.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1622.4 976 77.7
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1620.1 975 78.5
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1620.1 975 77.5
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1619.4 979 77.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1618.2 972 76.9
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1616.7 976 78.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1616.7 981 76.6
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1612.8 973 77.0
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1611.3 980 77.2
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1609.7 982 77.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 994 75.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 972 76.9
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1597.4 976 76.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1589.3 977 75.3
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1583.5 984 76.5
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 980 75.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1570.1 976 75.5
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 980 75.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1567.0 965 75.1
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1566.2 979 75.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1564.7 976 74.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1562.4 975 74.5
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 972 75.2
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 980 74.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 974 74.5
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1556.6 971 74.7
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1556.6 975 74.4
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 968 74.9
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1554.3 979 74.6
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1554.3 980 74.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1553.5 974 74.4
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 960 77.3
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 972 75.1
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1552.3 973 74.8
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1552.3 975 74.7
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 979 74.0
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1550.4 973 74.3
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1550.4 947 76.9
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1547.7 973 74.6
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1546.2 984 74.2
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1545.8 966 75.6
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1545.0 976 74.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1544.6 973 74.5
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1541.9 977 74.1
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 972 74.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1540.0 979 74.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1537.7 967 74.4
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 976 74.0
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 996 72.2
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 960 74.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1533.9 988 73.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1531.9 978 73.5
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1527.7 977 72.8
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1525.8 991 72.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 975 73.4
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1523.5 975 73.3
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1522.3 977 73.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1520.8 961 73.8
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 972 72.7
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 983 72.3
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1510.4 975 72.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1507.7 979 72.3
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 986 72.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 893 77.3
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1498.8 925 75.1
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1498.4 972 72.3
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1492.6 967 70.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 986 71.9
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1486.5 978 70.7
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1484.5 966 72.0
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1473.4 964 70.6
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1472.2 971 70.5
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 979 70.4
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1455.7 994 70.7
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1451.8 979 70.7
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 874 76.8
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1446.0 974 70.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1444.1 990 68.4
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1443.7 975 70.9
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1439.9 981 70.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 974 69.8
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1433.3 977 69.7
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1431.0 978 69.8
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1431.0 978 69.8
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1424.1 981 69.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1417.5 978 69.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 858 76.7
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1409.8 974 68.8
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1409.4 974 68.6
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1404.4 975 68.8
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1404.4 855 76.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1399.0 975 68.6
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1393.3 981 68.7
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1385.2 981 67.4
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1361.3 767 80.4
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1360.5 1002 63.8
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1327.8 976 66.1
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1312.4 786 78.1
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1307.4 978 66.1
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1302.0 979 65.3
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1243.8 853 68.7
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1240.7 774 75.6
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1215.3 791 72.2
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1202.2 783 71.8
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1083.2 978 54.4
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.0e-303 1044.3 685 72.3
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 3.4e-298 1028.5 961 53.0
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.8e-284 981.5 711 67.7
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.7e-281 973.0 975 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 5.3e-275 951.4 981 49.9
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 9.6e-269 930.6 969 49.7
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 7.1e-264 914.4 566 76.9
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.9e-241 839.3 1139 41.6
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.0e-214 749.2 402 84.3
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 2.3e-137 494.2 280 79.6
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.3e-119 435.3 343 62.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 6.5e-116 422.9 364 62.6
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 2.1e-114 417.9 416 53.8
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 2.4e-102 377.9 213 80.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.3e-91 340.9 192 81.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-88 332.0 275 59.6
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.8e-88 330.1 202 71.3
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.5e-75 288.1 211 65.9
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 8.1e-74 283.1 159 79.2
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.6e-69 267.3 155 74.2
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.6e-66 258.8 143 80.4
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 6.2e-66 256.9 737 29.2
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 3.0e-52 211.5 368 39.7
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.7e-45 188.3 779 24.0
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 5.6e-43 180.6 96 83.3
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-38 165.6 149 57.0
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 7.1e-38 163.7 149 55.7
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 8.7e-36 156.8 93 73.1
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 4.3e-35 154.5 153 54.2
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.6e-35 153.3 89 80.9
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 5.9e-32 144.1 88 72.7
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.0e-28 133.3 117 54.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.1e-27 129.8 160 41.9
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 5.0e-23 114.4 186 36.6
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.4e-22 112.8 184 36.4
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.0e-19 102.4 121 47.9
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-18 99.8 114 50.9
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.2e-18 99.0 122 45.9
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 4.1e-17 94.7 304 28.3
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.6e-13 82.8 70 55.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.9e-13 80.5 46 73.9
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 7.9e-13 80.5 76 55.3
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.5e-11 76.3 44 79.5
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.3e-07 63.2 78 43.6
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.8e-07 61.6 54 53.7


User provided reference genes

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