Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 3.7e-227 791.2 395 100.0
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 1.0e-184 650.2 400 83.8
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 8.9e-173 610.5 396 77.5
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 5.6e-167 591.3 400 75.0
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 5.2e-165 584.7 410 73.2
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.9e-162 576.2 398 75.1
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 3.5e-161 572.0 399 74.7
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 3.5e-161 572.0 398 73.6
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 3.9e-160 568.5 403 70.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.9e-159 566.2 418 70.3
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 4.3e-159 565.1 403 70.2
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 1.3e-158 563.5 401 70.6
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.8e-158 562.4 400 73.5
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 2.8e-158 562.4 398 72.1
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 3.6e-158 562.0 398 73.9
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 3.6e-158 562.0 398 74.1
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 4.0e-157 558.5 398 73.1
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 1.2e-156 557.0 398 73.4
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 3.4e-156 555.4 405 70.6
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 7.6e-156 554.3 408 70.6
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 2.9e-155 552.4 404 70.8
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 3.8e-155 552.0 403 70.0
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 4.9e-155 551.6 399 72.2
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 8.4e-155 550.8 409 68.5
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 1.1e-154 550.4 404 69.6
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.4e-154 550.1 404 69.8
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.2e-154 548.5 402 69.7
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 9.3e-154 547.4 398 70.6
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.2e-153 547.0 402 69.4
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.6e-153 545.0 403 68.7
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.3e-152 543.5 402 69.2
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 1.1e-151 540.4 400 69.2
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 2.5e-151 539.3 407 67.3
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 5.6e-151 538.1 403 68.5
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 9.6e-151 537.3 405 67.7
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.8e-150 535.0 428 65.2
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 1.4e-149 533.5 397 69.3
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 1.8e-149 533.1 408 67.9
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 4.0e-149 531.9 400 68.5
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 4.0e-149 531.9 399 69.2
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.0e-149 531.9 428 65.0
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 5.3e-149 531.6 397 68.3
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 5.3e-149 531.6 406 66.7
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 3.4e-148 528.9 413 64.4
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.5e-148 528.5 392 71.7
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 5.8e-148 528.1 403 66.3
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 7.6e-148 527.7 401 67.1
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 9.9e-148 527.3 401 67.3
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 8.4e-147 524.2 405 66.2
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 8.4e-147 524.2 423 64.1
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.1e-146 523.9 409 65.3
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.4e-146 523.5 403 66.5
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.4e-146 523.5 409 66.0
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 4.2e-146 521.9 403 65.0
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 5.5e-146 521.5 394 66.8
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 9.3e-146 520.8 404 66.6
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 2.7e-145 519.2 394 66.5
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 3.5e-145 518.8 397 64.5
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 4.6e-145 518.5 397 64.5
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 7.9e-145 517.7 409 62.8
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.3e-144 516.2 384 69.0
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 2.3e-144 516.2 394 66.0
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 3.0e-144 515.8 397 65.5
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 6.7e-144 514.6 348 72.7
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.5e-143 513.5 368 71.5
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 1.9e-143 513.1 400 65.8
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 1.9e-143 513.1 402 65.7
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 2.5e-143 512.7 397 67.0
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 9.6e-143 510.8 398 66.8
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 1.3e-142 510.4 404 63.1
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 1.3e-142 510.4 403 65.3
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.6e-142 510.0 409 62.3
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 2.1e-142 509.6 400 65.0
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 2.8e-142 509.2 404 62.9
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 2.8e-142 509.2 404 61.9
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 8.2e-142 507.7 403 65.3
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 1.1e-141 507.3 440 60.9
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 1.1e-141 507.3 400 64.5
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 1.4e-141 506.9 402 64.7
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.4e-141 506.9 336 74.7
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 1.8e-141 506.5 401 64.3
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 1.8e-141 506.5 399 64.7
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 2.4e-141 506.1 443 60.9
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 2.4e-141 506.1 408 64.5
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 3.1e-141 505.8 400 64.0
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 3.1e-141 505.8 400 64.0
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 5.3e-141 505.0 407 63.1
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 5.3e-141 505.0 400 64.5
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 6.9e-141 504.6 347 74.4
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 1.2e-140 503.8 401 64.6
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 1.2e-140 503.8 401 64.6
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.2e-140 503.8 405 62.7
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.2e-140 503.8 405 62.7
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.5e-140 503.4 399 64.2
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 4.5e-140 501.9 378 66.4
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 7.6e-140 501.1 401 64.3
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 7.6e-140 501.1 400 63.5
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.0e-139 500.7 400 63.5
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 1.1e-138 497.3 401 63.8
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.5e-138 496.1 398 64.1
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 3.2e-138 495.7 409 61.6
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 4.2e-138 495.4 408 61.8
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 9.3e-138 494.2 478 56.7
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.3e-136 490.3 333 71.8
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 2.3e-136 489.6 428 59.6
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 6.7e-136 488.0 338 71.6
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 6.7e-136 488.0 407 61.4
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 3.3e-135 485.7 357 68.3
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 7.4e-135 484.6 333 71.2
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 7.4e-135 484.6 333 70.9
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 2.2e-134 483.0 340 70.3
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.8e-133 479.9 342 72.5
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 2.6e-132 476.1 339 68.7
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 1.0e-131 474.2 338 67.5
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 1.3e-131 473.8 397 61.5
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 3.2e-130 469.2 401 59.1
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 2.1e-129 466.5 404 61.6
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.9e-127 459.9 393 60.1
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 4.3e-127 458.8 399 59.9
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 3.7e-126 455.7 408 57.4
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 4.1e-125 452.2 341 66.9
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 1.0e-123 447.6 402 57.5
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 2.0e-119 433.3 353 64.0
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 3.3e-119 432.6 437 52.6
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 8.2e-118 427.9 311 68.2
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 1.3e-115 420.6 292 72.9
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 9.1e-101 371.3 386 47.9
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 7.5e-95 351.7 329 51.4
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.5e-90 337.4 324 49.1
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.2e-84 317.8 348 45.4
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.7e-83 313.9 323 48.6
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 1.5e-82 310.8 283 58.0
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 9.5e-82 308.1 341 52.5
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 3.1e-80 303.1 194 76.3
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.6e-76 290.8 286 54.5
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 4.6e-76 289.3 270 53.0
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 5.6e-74 282.3 238 62.2
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 3.2e-69 266.5 219 61.2
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 2.2e-46 190.7 284 39.1
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 1.0e-43 181.8 154 59.1
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 5.1e-43 179.5 186 54.3
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 7.6e-39 165.6 178 47.8
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 3.7e-33 146.7 313 30.7
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 5.8e-31 139.4 105 67.6
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 1.0e-27 128.6 325 29.5
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 7.4e-26 122.5 107 59.8
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 6.2e-25 119.4 84 72.6
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 3.4e-23 113.6 61 85.2
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 9.3e-21 105.5 76 68.4
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.7e-20 104.0 59 78.0
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 6.1e-20 102.8 61 75.4
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 3.3e-18 97.1 131 42.0
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 1.3e-17 95.1 68 70.6
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 2.4e-16 90.9 68 64.7
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 4.1e-16 90.1 120 40.0
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 7.2e-13 79.3 62 58.1
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 2.0e-10 71.2 56 58.9
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 2.8e-09 67.4 75 52.0
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 1.5e-07 61.6 114 33.3
Sc07g0000810 Simmondsia chinensis HOM05D000916 ORTHO05D008340 2.6e-07 60.8 269 24.2
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 3.4e-07 60.5 113 35.4
CANSAT01G2185 Cannabis sativa HOM05D000363 ORTHO05D000236 1.3e-06 58.5 76 40.8
AUR62000738 Chenopodium quinoa HOM05D000363 ORTHO05D000236 8.5e-06 55.8 340 25.3


User provided reference genes

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