Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 4.0e-90 334.7 168 100.0
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 8.7e-85 317.0 158 100.0
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 2.9e-64 248.8 139 84.9
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 4.3e-60 235.0 137 78.8
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 7.4e-60 234.2 138 78.3
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 1.6e-59 233.0 139 77.7
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.7e-59 231.9 137 78.1
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.7e-59 231.9 137 78.1
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.7e-59 231.9 137 78.1
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 8.2e-59 230.7 138 76.8
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.4e-58 229.2 138 76.8
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 3.1e-58 228.8 138 75.4
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 3.1e-58 228.8 137 77.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 3.1e-58 228.8 139 74.8
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 4.1e-58 228.4 139 74.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 6.9e-58 227.6 140 74.3
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 6.9e-58 227.6 140 74.3
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 9.0e-58 227.3 138 75.4
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 9.0e-58 227.3 138 76.8
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.2e-57 226.9 138 76.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 1.5e-57 226.5 140 73.6
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 1.5e-57 226.5 139 74.1
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 2.0e-57 226.1 138 76.1
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 2.6e-57 225.7 137 75.2
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 4.5e-57 224.9 138 74.6
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 5.9e-57 224.6 138 73.9
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 1.0e-56 223.8 138 75.4
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.0e-56 223.8 139 70.5
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.3e-56 223.4 138 75.4
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 1.3e-56 223.4 137 75.2
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 1.7e-56 223.0 139 74.1
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 2.2e-56 222.6 137 74.5
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 2.9e-56 222.2 140 72.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 5.0e-56 221.5 139 73.4
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 8.5e-56 220.7 137 73.7
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 8.5e-56 220.7 140 70.7
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 1.9e-55 219.5 140 70.7
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.2e-55 218.8 140 70.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 5.5e-55 218.0 140 71.4
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 7.2e-55 217.6 138 68.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 7.2e-55 217.6 138 71.0
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 9.4e-55 217.2 140 70.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 1.2e-54 216.9 139 69.1
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 1.6e-54 216.5 139 70.5
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 1.6e-54 216.5 139 72.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 2.1e-54 216.1 138 68.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 2.1e-54 216.1 140 70.0
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 2.1e-54 216.1 140 70.0
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 3.6e-54 215.3 138 73.9
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 4.6e-54 214.9 137 70.8
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.6e-54 214.9 140 69.3
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 6.1e-54 214.5 139 71.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 7.9e-54 214.2 139 71.2
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 7.9e-54 214.2 139 69.8
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 1.0e-53 213.8 140 71.4
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.0e-53 213.8 139 69.8
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.8e-53 213.0 138 69.6
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 2.3e-53 212.6 140 71.4
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 3.9e-53 211.8 140 70.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 3.9e-53 211.8 140 70.0
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 6.7e-53 211.1 139 69.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 6.7e-53 211.1 139 69.1
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 6.7e-53 211.1 139 69.8
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 6.7e-53 211.1 140 67.9
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 1.1e-52 210.3 139 70.5
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-52 209.9 139 69.1
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 2.0e-52 209.5 139 69.8
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 2.0e-52 209.5 139 69.1
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.0e-52 209.5 141 66.7
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 4.3e-52 208.4 173 60.7
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 4.3e-52 208.4 141 67.4
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 5.7e-52 208.0 139 68.3
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 1.7e-51 206.5 137 70.1
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.2e-51 206.1 140 67.1
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 2.8e-51 205.7 139 66.9
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 2.8e-51 205.7 138 72.5
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 4.8e-51 204.9 139 67.6
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 6.3e-51 204.5 137 69.3
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 8.2e-51 204.1 138 71.7
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.4e-50 203.4 139 69.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.8e-50 203.0 139 67.6
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.4e-50 202.6 137 69.3
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 2.4e-50 202.6 137 68.6
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 2.4e-50 202.6 139 67.6
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.1e-50 202.2 137 66.4
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.1e-50 202.2 137 67.9
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 4.1e-50 201.8 137 67.9
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 5.3e-50 201.4 137 67.9
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 5.3e-50 201.4 137 67.9
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 6.9e-50 201.1 137 67.2
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 9.1e-50 200.7 136 66.2
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 9.1e-50 200.7 134 68.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-49 200.3 134 68.7
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.2e-49 200.3 137 67.9
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.2e-49 200.3 137 66.4
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.0e-49 199.5 137 66.4
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.4e-49 198.7 137 65.7
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.7e-49 197.6 137 66.4
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 2.9e-48 195.7 141 62.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 3.8e-48 195.3 137 65.0
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 3.8e-48 195.3 136 65.4
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.8e-48 195.3 136 65.4
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 3.8e-48 195.3 137 66.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 6.5e-48 194.5 161 57.8
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 8.5e-48 194.1 136 65.4
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 8.5e-48 194.1 139 64.0
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.1e-47 193.7 137 65.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-47 193.4 136 64.7
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.9e-47 193.0 134 65.7
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.9e-47 193.0 137 65.0
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 3.2e-47 192.2 134 64.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.2e-46 190.3 137 65.7
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 4.7e-46 188.3 141 64.5
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.0e-45 187.2 132 63.6
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.0e-45 187.2 137 62.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.3e-45 186.0 137 61.3
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 2.3e-45 186.0 106 75.5
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.8e-43 179.1 137 59.9
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.3e-40 170.2 141 57.4
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.9e-40 169.1 107 68.2
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 6.5e-40 167.9 138 59.4
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.5e-39 166.8 139 56.1
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 7.2e-39 164.5 139 56.8
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 2.7e-38 162.5 93 76.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 8.8e-37 157.5 138 53.6
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.1e-36 157.1 134 53.0
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.7e-35 153.3 140 53.6
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.1e-34 150.6 93 71.0
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-34 150.2 141 53.2
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 7.7e-33 144.4 81 71.6
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.7e-32 143.3 89 71.9
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 6.5e-32 141.4 139 51.1
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-28 130.2 139 51.1
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 3.4e-28 129.0 132 46.2
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.4e-28 129.0 67 82.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 5.0e-24 115.2 104 58.7
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.5e-23 112.8 67 71.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.7e-22 109.4 91 56.0
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.1e-22 108.2 69 73.9
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.2e-19 99.8 137 43.1
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 8.3e-19 97.8 162 34.0
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.2e-17 94.0 138 40.6
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 5.9e-17 91.7 136 40.4
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.9e-15 86.7 61 62.3
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 7.3e-15 84.7 42 88.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.0e-13 80.9 49 81.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 5.9e-09 65.1 154 35.1


User provided reference genes

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