Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 8.6e-257 889.8 444 100.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.5e-203 711.1 444 78.8
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.8e-199 698.7 444 78.8
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.5e-197 693.0 444 77.7
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 4.3e-192 674.9 446 76.5
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.8e-191 672.2 444 75.0
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.3e-190 667.9 444 75.2
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.5e-189 664.8 444 75.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.6e-186 655.2 450 73.1
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.8e-182 642.9 444 74.8
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.4e-182 642.5 444 74.8
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.5e-181 638.3 444 72.7
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 8.5e-180 634.0 444 71.8
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 7.2e-179 630.9 442 71.7
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.1e-176 623.6 444 70.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.6e-176 622.5 418 74.6
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.7e-176 621.3 441 70.1
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.7e-175 619.8 445 70.8
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.7e-175 619.8 444 69.8
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.8e-175 618.2 445 69.9
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.4e-174 615.9 444 69.8
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 7.0e-174 614.4 444 69.6
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.5e-173 613.2 446 70.2
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.5e-173 613.2 475 66.7
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 7.7e-173 610.9 472 68.0
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.0e-172 610.5 442 70.6
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 3.8e-172 608.6 440 70.2
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 8.5e-172 607.4 440 70.0
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.9e-171 606.3 445 68.3
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 2.5e-171 605.9 386 78.8
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 4.2e-171 605.1 446 70.2
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.5e-171 604.7 443 69.1
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.2e-170 603.6 443 68.8
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 6.1e-170 601.3 443 67.5
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.3e-169 599.4 446 69.7
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 3.0e-169 599.0 443 68.8
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.7e-169 597.8 446 69.5
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.7e-169 597.8 443 69.5
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 6.7e-169 597.8 443 68.6
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-168 597.0 446 69.5
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.5e-168 596.7 446 69.5
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.5e-168 596.7 443 67.5
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.6e-168 595.9 452 67.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 4.4e-168 595.1 386 77.2
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 4.4e-168 595.1 443 68.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.3e-167 591.3 446 69.3
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 8.2e-167 590.9 443 67.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.1e-166 590.5 446 68.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 7.0e-166 587.8 444 68.5
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.0e-165 586.3 445 67.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.0e-165 586.3 445 67.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 4.5e-165 585.1 442 67.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.9e-165 584.7 445 67.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.9e-164 582.4 445 67.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 5.0e-164 581.6 443 65.5
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.0e-164 581.6 439 67.7
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.5e-163 580.1 443 66.6
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 2.5e-163 579.3 445 67.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.2e-160 570.5 445 65.6
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.2e-159 566.2 403 70.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.2e-159 566.2 403 70.0
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 4.8e-159 565.1 439 65.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.3e-158 561.6 443 65.2
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 9.1e-158 560.8 434 67.1
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.7e-156 556.6 463 61.3
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 5.5e-155 551.6 435 65.3
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.1e-154 549.7 410 67.3
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.8e-153 546.6 462 60.8
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.5e-149 532.3 424 63.2
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.1e-147 527.3 411 66.9
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-146 523.9 443 61.9
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.6e-146 523.5 457 59.1
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.1e-146 523.1 450 60.9
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.1e-146 523.1 449 61.7
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.6e-146 522.3 456 58.3
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.0e-145 520.8 424 62.0
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 4.0e-145 518.8 428 62.9
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 6.8e-145 518.1 410 64.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.9e-145 517.7 382 68.8
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 7.5e-144 514.6 443 60.0
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.5e-144 514.6 443 61.2
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 3.7e-143 512.3 446 58.7
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 6.3e-143 511.5 436 62.4
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-142 510.4 435 61.1
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.4e-142 510.4 357 73.1
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.8e-142 510.0 436 61.0
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 9.2e-142 507.7 424 61.6
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 9.2e-142 507.7 430 60.9
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 9.2e-142 507.7 392 65.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.0e-141 506.5 445 62.7
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 7.8e-141 504.6 444 57.7
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.3e-140 503.1 435 60.2
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.3e-140 503.1 444 58.1
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 6.6e-140 501.5 445 60.4
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 8.6e-140 501.1 445 60.2
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.5e-139 500.4 435 59.8
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-138 497.3 390 63.6
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-138 497.3 390 63.6
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.6e-138 496.9 447 58.8
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 6.1e-138 495.0 383 64.8
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 6.1e-138 495.0 349 70.8
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 5.2e-137 491.9 431 58.7
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.8e-136 488.4 475 57.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-135 486.5 307 77.5
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 4.9e-135 485.3 319 75.5
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 6.4e-135 485.0 300 80.3
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.3e-135 484.6 386 63.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.9e-132 475.7 391 63.7
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 4.3e-131 472.2 344 70.3
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.3e-131 472.2 443 56.7
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.9e-126 456.8 443 55.3
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.7e-125 453.0 432 55.1
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.6e-124 448.4 403 58.1
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.5e-123 447.2 430 56.7
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 7.5e-120 434.9 396 57.3
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.9e-116 422.5 352 61.1
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-113 414.5 292 70.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.8e-113 413.7 431 54.1
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.0e-113 412.5 342 63.2
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 6.4e-111 405.2 442 52.5
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.1e-102 377.9 289 66.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.2e-101 374.4 322 60.9
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.5e-101 372.9 289 66.8
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.3e-100 370.9 289 67.1
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 8.7e-100 368.2 289 66.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.6e-98 362.8 283 66.1
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 4.8e-98 362.5 352 54.8
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.3e-92 344.4 289 63.3
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 3.8e-87 326.2 429 48.5
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 3.2e-86 323.2 227 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.8e-82 310.1 337 47.8
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.9e-75 287.3 376 46.3
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.3e-74 284.6 181 80.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.7e-74 283.1 156 91.0
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.1e-73 279.6 157 89.8
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 5.9e-72 275.8 155 88.4
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.9e-71 273.5 157 87.9
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.1e-68 262.7 192 65.1
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 6.7e-68 262.3 162 75.9
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.7e-66 257.7 528 36.9
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 2.2e-66 257.3 156 81.4
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.8e-65 254.2 145 86.9
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 4.4e-59 233.0 266 48.9
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.3e-58 231.5 141 80.9
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 4.8e-58 229.6 133 88.0
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 6.5e-55 219.2 184 63.6
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.4e-52 211.5 182 59.9
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.0e-52 209.9 243 48.6
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 8.2e-50 202.2 122 80.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.5e-46 190.7 154 59.7
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.7e-45 187.2 131 77.1
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.7e-42 177.9 476 30.5
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 7.0e-41 172.6 99 88.9
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-40 171.4 317 38.8
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.9e-39 167.2 106 78.3
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.9e-38 164.5 183 51.4
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.3e-34 151.8 129 57.4
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 3.3e-30 137.1 146 51.4
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 5.4e-25 119.8 123 52.0
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.0e-23 115.5 215 35.8
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 6.2e-21 106.3 56 98.2
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.8e-20 104.8 68 79.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.8e-19 99.8 58 86.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-18 97.8 109 50.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 4.3e-14 83.6 246 29.3
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.4e-12 78.6 57 64.9
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 4.6e-08 63.5 50 64.0
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 3.0e-07 60.8 78 41.0
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.6e-07 59.7 80 43.8


User provided reference genes

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