Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 5.3e-59 230.7 108 100.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.4e-43 179.5 103 75.7
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 5.3e-43 177.6 103 76.7
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 9.0e-43 176.8 103 76.7
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-42 175.3 103 76.7
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 7.6e-42 173.7 103 75.7
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.7e-41 172.6 103 75.7
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.9e-41 171.8 103 77.7
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.4e-41 170.2 103 73.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.4e-40 169.5 103 73.8
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-40 169.5 103 73.8
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.4e-40 169.5 103 74.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.4e-40 169.5 103 75.7
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.5e-40 168.7 103 74.8
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.5e-39 164.9 103 72.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 3.5e-39 164.9 103 73.8
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.5e-39 164.9 103 70.9
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.6e-39 164.5 103 71.8
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 7.9e-39 163.7 103 69.9
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.3e-38 162.9 102 71.6
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 3.0e-38 161.8 103 69.9
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 5.1e-38 161.0 103 69.9
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.7e-38 160.6 104 70.2
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 8.7e-38 160.2 128 62.5
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.3e-37 158.3 103 68.0
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 4.3e-37 157.9 103 69.9
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 5.7e-37 157.5 103 67.0
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 7.4e-37 157.1 103 69.9
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 9.7e-37 156.8 99 71.7
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.3e-36 156.4 103 70.9
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.6e-36 156.0 103 69.9
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.2e-36 155.6 103 67.0
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.2e-36 155.6 103 67.0
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.8e-36 155.2 103 67.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 2.8e-36 155.2 103 69.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 3.7e-36 154.8 104 67.3
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.7e-36 154.8 103 63.1
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 3.7e-36 154.8 104 67.3
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 3.7e-36 154.8 103 62.1
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 3.7e-36 154.8 103 68.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 3.7e-36 154.8 99 73.7
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 4.8e-36 154.5 103 66.0
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 8.2e-36 153.7 103 68.9
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.4e-35 152.9 102 66.7
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.4e-35 152.9 103 67.0
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.4e-35 152.9 106 65.1
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.8e-35 152.5 103 66.0
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.4e-35 152.1 99 70.7
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 3.1e-35 151.8 103 61.2
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 3.1e-35 151.8 104 67.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.1e-35 151.4 104 66.3
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 5.3e-35 151.0 103 66.0
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 5.3e-35 151.0 103 64.1
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 6.9e-35 150.6 102 65.7
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 6.9e-35 150.6 103 65.0
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 6.9e-35 150.6 103 61.2
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 9.0e-35 150.2 119 58.8
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 9.0e-35 150.2 103 66.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.2e-34 149.8 103 65.0
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.2e-34 149.8 103 61.2
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.4e-34 148.3 103 64.1
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.5e-34 147.9 103 64.1
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.0e-33 146.7 103 67.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.0e-33 146.7 97 69.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.7e-33 146.0 139 52.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.2e-33 145.6 104 61.5
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.2e-33 145.6 109 66.1
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 2.2e-33 145.6 103 63.1
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 2.2e-33 145.6 109 60.6
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-33 145.2 103 63.1
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.0e-33 144.4 103 63.1
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.0e-33 144.4 109 66.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-32 143.3 104 60.6
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.5e-32 142.1 109 60.6
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.5e-32 142.1 103 65.0
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.2e-32 141.7 109 61.5
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 4.2e-32 141.4 102 61.8
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 4.2e-32 141.4 110 60.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 5.5e-32 141.0 103 61.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 7.2e-32 140.6 82 76.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.2e-31 139.8 109 59.6
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.2e-31 139.8 105 63.8
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.2e-31 139.8 108 60.2
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.1e-31 139.0 103 60.2
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.1e-31 139.0 103 60.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.1e-31 139.0 103 60.2
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.6e-31 138.3 109 58.7
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 6.1e-31 137.5 108 59.3
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.1e-31 137.5 108 59.3
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 7.9e-31 137.1 127 51.2
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.0e-30 136.7 108 58.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.4e-30 136.3 108 58.3
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.8e-30 136.0 99 60.6
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.0e-30 135.2 108 58.3
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.7e-30 134.0 84 69.0
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 5.7e-29 131.0 103 59.2
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 5.7e-29 131.0 85 67.1
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 7.4e-29 130.6 103 58.3
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 7.4e-29 130.6 75 77.3
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 7.4e-29 130.6 106 58.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.2e-28 129.0 103 56.3
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.2e-28 129.0 103 56.3
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.7e-28 128.3 116 54.3
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 8.2e-28 127.1 103 59.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.4e-27 126.3 127 51.2
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.4e-27 125.6 106 55.7
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.4e-27 125.6 106 55.7
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 5.3e-27 124.4 106 54.7
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.3e-27 124.4 106 54.7
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.6e-26 122.1 91 62.6
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.4e-26 121.7 106 53.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 5.9e-26 120.9 100 56.0
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 6.5e-25 117.5 78 65.4
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.5e-24 115.5 100 55.0
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.1e-23 112.5 86 61.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.1e-23 112.5 100 55.0
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 6.1e-23 110.9 62 80.6
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.4e-21 104.8 72 66.7
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.9e-18 94.4 66 66.7
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.3e-17 93.2 62 66.1
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-16 90.1 62 67.7
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.9e-14 81.6 61 63.9
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 1.5e-13 79.7 64 57.8
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.0e-13 79.3 62 59.7
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 3.3e-13 78.6 101 41.6
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.4e-13 78.2 62 61.3
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 5.7e-13 77.8 61 59.0
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.7e-13 77.8 65 55.4
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 7.4e-13 77.4 60 60.0
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 7.4e-13 77.4 60 60.0
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 9.7e-13 77.0 52 63.5
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 7.0e-11 70.9 54 57.4
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.1e-11 70.5 40 72.5
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 9.1e-11 70.5 37 78.4
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 9.1e-11 70.5 39 79.5
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.0e-10 69.3 54 57.4
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 4.5e-10 68.2 108 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 5.9e-10 67.8 93 40.9
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.9e-10 67.8 101 34.7
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.9e-10 67.8 100 41.0
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.5e-08 63.2 82 40.2
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.5e-08 62.4 37 75.7
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 3.2e-08 62.0 96 36.5
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.0e-06 55.5 76 39.5
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 8.8e-06 53.9 81 40.7


User provided reference genes

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