Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu031750.4 Olea europaea HOM05D041624 ORTHO05D009969 7.3e-175 617.1 302 100.0
Oeu048608.1 Olea europaea HOM05D041624 ORTHO05D009969 6.5e-99 364.8 376 55.9
Oeu048605.1 Olea europaea HOM05D041624 ORTHO05D009969 1.7e-91 340.1 534 42.1
Oeu051266.1 Olea europaea HOM05D011412 ORTHO05D009969 2.1e-25 120.6 118 51.7
Oeu029234.1 Olea europaea HOM05D011412 ORTHO05D009969 5.3e-24 115.9 125 48.0
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 5.3e-24 115.9 125 47.2
Oeu014492.1 Olea europaea HOM05D011412 ORTHO05D009969 7.1e-21 105.5 114 48.2
Oeu034504.1 Olea europaea HOM05D011412 ORTHO05D009969 1.5e-18 97.8 107 47.7
Oeu029249.1 Olea europaea HOM05D011412 ORTHO05D009969 3.3e-18 96.7 107 46.7
Oeu045757.1 Olea europaea HOM05D011412 ORTHO05D009969 5.3e-16 89.4 107 47.7
Oeu032521.1 Olea europaea HOM05D011412 ORTHO05D009969 6.5e-14 82.4 107 43.0
Nitab4.5_0003774g0010 Nicotiana tabacum HOM05D038292 ORTHO05D009969 1.1e-13 81.6 119 39.5
Dinv30482 Davidia involucrata HOM05D009853 ORTHO05D009969 2.5e-13 80.5 177 34.5
Lj1C1007T16 Lonicera japonica HOM05D000307 ORTHO05D000166 2.5e-13 80.5 145 34.5
Lj1C1007T18 Lonicera japonica HOM05D000307 ORTHO05D000166 4.2e-13 79.7 145 35.2
CSS0039249 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 5.5e-13 79.3 144 34.7
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 9.3e-13 78.6 77 48.1
Actinidia20182 Actinidia chinensis HOM05D011412 ORTHO05D009969 9.3e-13 78.6 146 34.2
CSS0003429 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.2e-12 78.2 144 34.7
PGSC0003DMG400024902 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.2e-12 78.2 119 33.6
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 1.6e-12 77.8 124 39.5
Rhsim08G0027100 Rhododendron simsii HOM05D011412 ORTHO05D009969 1.6e-12 77.8 72 51.4
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 2.1e-12 77.4 154 33.8
PGSC0003DMG400026582 Solanum tuberosum HOM05D009853 ORTHO05D009969 2.1e-12 77.4 128 32.0
PGSC0003DMG400018623 Solanum tuberosum HOM05D013339 ORTHO05D009969 2.7e-12 77.0 173 28.3
CAN.G798.34 Capsicum annuum HOM05D009853 ORTHO05D009969 3.5e-12 76.6 129 34.1
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 3.5e-12 76.6 128 31.2
Nitab4.5_0029272g0020 Nicotiana tabacum HOM05D009853 ORTHO05D009969 7.9e-12 75.5 84 44.0
Rhsim08G0215000 Rhododendron simsii HOM05D011412 ORTHO05D009969 7.9e-12 75.5 163 31.9
Sopen05g008160 Solanum pennellii HOM05D013339 ORTHO05D009969 1.0e-11 75.1 144 35.4
PGSC0003DMG400033092 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.0e-11 75.1 129 31.0
QL05p033878 Quercus lobata HOM05D020328 ORTHO05D009969 1.3e-11 74.7 173 32.9
PGSC0003DMG400026881 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.3e-11 74.7 74 44.6
CSS0020150 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.8e-11 74.3 136 33.1
Solyc05g013370.1 Solanum lycopersicum HOM05D013339 ORTHO05D009969 1.8e-11 74.3 146 34.9
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 2.3e-11 73.9 191 27.7
Solyc06g071300.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 2.3e-11 73.9 137 31.4
PGSC0003DMG400036234 Solanum tuberosum HOM05D009853 ORTHO05D009969 2.3e-11 73.9 120 34.2
CSS0026794 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 3.0e-11 73.6 143 31.5
Nitab4.5_0000948g0200 Nicotiana tabacum HOM05D009853 ORTHO05D009969 3.0e-11 73.6 73 46.6
Sopen06g027600 Solanum pennellii HOM05D009853 ORTHO05D009969 3.0e-11 73.6 138 31.2
vmacro23014 Vaccinium macrocarpon HOM05D011412 ORTHO05D009969 3.0e-11 73.6 149 35.6
Oeu032519.1 Olea europaea HOM05D011412 ORTHO05D009969 3.9e-11 73.2 72 51.4
PGSC0003DMG400007682 Solanum tuberosum HOM05D013339 ORTHO05D009969 5.1e-11 72.8 137 36.5
Dinv38023 Davidia involucrata HOM05D011412 ORTHO05D009969 8.7e-11 72.0 128 32.0
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 1.1e-10 71.6 123 36.6
Sabra10G0187100 Salix brachista HOM05D015295 ORTHO05D009969 1.1e-10 71.6 144 32.6
Sed0006669 Sechium edule HOM05D000307 ORTHO05D000166 1.1e-10 71.6 201 30.8
Dinv40186 Davidia involucrata HOM05D009853 ORTHO05D009969 1.9e-10 70.9 138 31.2
Rhsim07G0189200 Rhododendron simsii HOM05D009853 ORTHO05D009969 1.9e-10 70.9 79 43.0
Sopen01g046240 Solanum pennellii HOM05D000600 ORTHO05D000432 1.9e-10 70.9 79 39.2
Sopen01g046270 Solanum pennellii HOM05D000600 ORTHO05D000432 1.9e-10 70.9 70 41.4
PGSC0003DMG400016835 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.9e-10 70.9 128 30.5
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.5e-10 70.5 146 28.8
PGSC0003DMG400016838 Solanum tuberosum HOM05D009853 ORTHO05D009969 2.5e-10 70.5 129 29.5
CSS0013985 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.3e-10 70.1 187 31.0
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 4.3e-10 69.7 142 31.0
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 4.3e-10 69.7 65 50.8
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.7e-10 69.3 156 31.4
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.7e-10 69.3 156 31.4
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.4e-10 68.9 145 31.0
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.7e-10 68.6 156 31.4
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-09 68.2 145 31.0
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-09 68.2 198 28.8
CSS0048320 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.3e-09 68.2 175 28.0
Solyc01g103870.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 1.6e-09 67.8 79 38.0
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.8e-09 67.0 186 29.6
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 6.3e-09 65.9 155 29.0
Sabra08G0013600 Salix brachista HOM05D015295 ORTHO05D009969 6.3e-09 65.9 57 50.9
Potri.008G020300 Populus trichocarpa HOM05D015295 ORTHO05D009969 8.2e-09 65.5 54 53.7
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.1e-08 65.1 178 28.1
CSS0020566 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.1e-08 65.1 56 46.4
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 1.1e-08 65.1 131 31.3
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 1.1e-08 65.1 146 30.1
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.8e-08 64.3 145 30.3
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.8e-08 64.3 145 30.3
CsaV3_2G019470 Cucumis sativus L. HOM05D000307 ORTHO05D000166 2.4e-08 63.9 191 28.3
Potri.010G238900 Populus trichocarpa HOM05D015295 ORTHO05D009969 2.4e-08 63.9 153 33.3
ClCG02G000370 Citrullus lanatus HOM05D000307 ORTHO05D000166 3.1e-08 63.5 185 27.6
CSS0029060 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.1e-08 63.2 153 32.0
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 4.1e-08 63.2 73 35.6
Nn4g24661 Nelumbo nucifera HOM05D000307 ORTHO05D000166 4.1e-08 63.2 139 32.4
Nitab4.5_0000365g0070 Nicotiana tabacum HOM05D000307 ORTHO05D000166 4.1e-08 63.2 72 43.1
Peaxi162Scf00076g01010 Petunia axillaris HOM05D000307 ORTHO05D000166 4.1e-08 63.2 138 29.7
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 5.3e-08 62.8 61 44.3
Nitab4.5_0007355g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 5.3e-08 62.8 135 31.1
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 9.0e-08 62.0 152 25.0
PSO541G0906 Papaver somniferum HOM05D000307 ORTHO05D000166 9.0e-08 62.0 146 30.1
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 1.2e-07 61.6 147 29.3
Nitab4.5_0000167g0220 Nicotiana tabacum HOM05D000307 ORTHO05D000166 1.5e-07 61.2 141 30.5
PSO675G0191 Papaver somniferum HOM05D000307 ORTHO05D000166 1.5e-07 61.2 146 30.1
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 1.5e-07 61.2 165 27.9
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 2.0e-07 60.8 101 36.6
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 2.0e-07 60.8 76 38.2
arahy.Tifrunner.gnm1.ann1.P24S13 Arachis hypogaea HOM05D000307 ORTHO05D000166 2.6e-07 60.5 76 44.7
Actinidia09597 Actinidia chinensis HOM05D002537 ORTHO05D002751 3.4e-07 60.1 143 30.8
Rhsim08G0003700 Rhododendron simsii HOM05D000307 ORTHO05D000166 4.5e-07 59.7 147 28.6
TWI38G1011 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 4.5e-07 59.7 118 31.4
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.9e-07 59.3 118 31.4
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 5.9e-07 59.3 136 30.1
MELO3C023227.2 Cucumis melo HOM05D000307 ORTHO05D000166 5.9e-07 59.3 143 30.8
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 7.7e-07 58.9 134 27.6
CSS0047056 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.7e-07 58.9 151 29.8
Rhsim04G0216100 Rhododendron simsii HOM05D011412 ORTHO05D009969 7.7e-07 58.9 120 32.5
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.0e-06 58.5 134 26.9
CANSAT25G1728 Cannabis sativa HOM05D000307 ORTHO05D000166 1.0e-06 58.5 95 37.9
CANSAT25G3387 Cannabis sativa HOM05D000307 ORTHO05D000166 1.0e-06 58.5 95 37.9
PGR042G2078 Punica granatum HOM05D000307 ORTHO05D000166 1.0e-06 58.5 73 43.8
Sabra15G0102400 Salix brachista HOM05D006887 ORTHO05D009969 1.0e-06 58.5 61 42.6
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.0e-06 58.5 128 32.0
Cpa.g.sc25.27 Carica papaya HOM05D063200 ORTHO05D009969 1.3e-06 58.2 90 35.6
Peaxi162Scf01013g00025 Petunia axillaris HOM05D000307 ORTHO05D000166 1.3e-06 58.2 150 29.3
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.7e-06 57.8 130 32.3
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.7e-06 57.8 91 37.4
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-06 57.8 179 24.6
CSS0025868 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.7e-06 57.8 128 30.5
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-06 57.8 183 23.0
Cpa.g.sc25.11 Carica papaya HOM05D063200 ORTHO05D009969 1.7e-06 57.8 145 29.7
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.7e-06 57.8 141 27.0
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 1.7e-06 57.8 168 28.0
PGSC0003DMG400035438 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.7e-06 57.8 106 28.3
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.2e-06 57.4 134 26.9
CSS0036324 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.2e-06 57.4 146 30.8
CAN.G337.111 Capsicum annuum HOM05D000307 ORTHO05D000166 2.2e-06 57.4 171 29.2
Haze_25110 Corylus avellana HOM05D000307 ORTHO05D000166 2.2e-06 57.4 143 30.1
TPR.G26403 Trifolium pratense HOM05D008089 ORTHO05D000166 2.2e-06 57.4 76 39.5
Hma1.2p1_0038F.1_g024040 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 2.9e-06 57.0 84 40.5
Potri.001G329800 Populus trichocarpa HOM05D056674 ORTHO05D000166 2.9e-06 57.0 74 39.2
Potri.015G077800 Populus trichocarpa HOM05D006887 ORTHO05D009969 2.9e-06 57.0 70 42.9
Sopen11g010690 Solanum pennellii HOM05D000307 ORTHO05D000166 2.9e-06 57.0 62 40.3
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 3.8e-06 56.6 82 35.4
CANSAT25G2697 Cannabis sativa HOM05D000307 ORTHO05D000166 3.8e-06 56.6 98 34.7
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.0e-06 56.2 58 44.8
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 5.0e-06 56.2 130 30.0
CSS0020770 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.0e-06 56.2 153 29.4
CDE11G0692 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 5.0e-06 56.2 97 36.1
Nitab4.5_0002698g0090 Nicotiana tabacum HOM05D009853 ORTHO05D009969 5.0e-06 56.2 55 49.1
Oeu050185.1 Olea europaea HOM05D011412 ORTHO05D009969 5.0e-06 56.2 51 51.0
QL09p041547 Quercus lobata HOM05D000307 ORTHO05D000166 5.0e-06 56.2 75 40.0
Thecc.01G119800 Theobroma cacao HOM05D000307 ORTHO05D000166 5.0e-06 56.2 140 30.7
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.5e-06 55.8 62 35.5
CSS0029498 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 6.5e-06 55.8 153 30.1
CANSAT64G0685 Cannabis sativa HOM05D000307 ORTHO05D000166 6.5e-06 55.8 105 34.3
CDE05G0068 Ceratophyllum demersum HOM05D000307 ORTHO05D000166 6.5e-06 55.8 144 30.6
MBI10_g26051_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 6.5e-06 55.8 143 32.2
SGA_v2.0_scaffold304G47921 Striga asiatica HOM05D000307 ORTHO05D000166 6.5e-06 55.8 65 38.5
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.5e-06 55.5 117 30.8
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 8.5e-06 55.5 148 30.4
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 8.5e-06 55.5 56 46.4
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 8.5e-06 55.5 54 46.3
CSS0009687 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 8.5e-06 55.5 94 36.2
Ca_13731_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 8.5e-06 55.5 76 34.2
MD17G1250500 Malus domestica HOM05D000307 ORTHO05D000166 8.5e-06 55.5 65 41.5
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 8.5e-06 55.5 142 28.9


User provided reference genes

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