Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 1.3e-70 269.6 135 100.0
Oeu029234.1 Olea europaea HOM05D011412 ORTHO05D009969 1.7e-67 259.2 134 96.3
Oeu029249.1 Olea europaea HOM05D011412 ORTHO05D009969 2.8e-49 198.7 102 95.1
Oeu034504.1 Olea europaea HOM05D011412 ORTHO05D009969 1.1e-45 186.8 104 87.5
Oeu045757.1 Olea europaea HOM05D011412 ORTHO05D009969 3.3e-26 122.1 100 63.0
Oeu031750.4 Olea europaea HOM05D041624 ORTHO05D009969 1.5e-23 113.2 125 47.2
Oeu032521.1 Olea europaea HOM05D011412 ORTHO05D009969 2.0e-23 112.8 100 58.0
Oeu014492.1 Olea europaea HOM05D011412 ORTHO05D009969 2.6e-23 112.5 113 53.1
Oeu051266.1 Olea europaea HOM05D011412 ORTHO05D009969 2.4e-21 105.9 108 48.1
Oeu048608.1 Olea europaea HOM05D041624 ORTHO05D009969 3.2e-21 105.5 126 46.8
Oeu032519.1 Olea europaea HOM05D011412 ORTHO05D009969 4.2e-21 105.1 100 55.0
Oeu048605.1 Olea europaea HOM05D041624 ORTHO05D009969 9.3e-21 104.0 126 46.0
PGSC0003DMG400026582 Solanum tuberosum HOM05D009853 ORTHO05D009969 5.3e-16 88.2 125 41.6
Nitab4.5_0003774g0010 Nicotiana tabacum HOM05D038292 ORTHO05D009969 6.9e-16 87.8 115 40.0
PGSC0003DMG400033092 Solanum tuberosum HOM05D009853 ORTHO05D009969 3.4e-15 85.5 125 40.8
PGSC0003DMG400024902 Solanum tuberosum HOM05D009853 ORTHO05D009969 7.6e-15 84.3 137 38.7
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 9.9e-15 84.0 126 39.7
PGSC0003DMG400018623 Solanum tuberosum HOM05D013339 ORTHO05D009969 1.3e-14 83.6 127 37.8
Dinv40186 Davidia involucrata HOM05D009853 ORTHO05D009969 1.7e-14 83.2 129 34.9
Nitab4.5_0000948g0200 Nicotiana tabacum HOM05D009853 ORTHO05D009969 2.9e-14 82.4 110 39.1
CAN.G798.34 Capsicum annuum HOM05D009853 ORTHO05D009969 3.8e-14 82.0 124 37.9
PGSC0003DMG400026881 Solanum tuberosum HOM05D009853 ORTHO05D009969 4.9e-14 81.6 124 37.1
Sopen01g046240 Solanum pennellii HOM05D000600 ORTHO05D000432 8.4e-14 80.9 112 36.6
PGSC0003DMG400016838 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.4e-13 80.1 110 37.3
Nitab4.5_0029272g0020 Nicotiana tabacum HOM05D009853 ORTHO05D009969 1.9e-13 79.7 111 38.7
Solyc05g013370.1 Solanum lycopersicum HOM05D013339 ORTHO05D009969 1.9e-13 79.7 120 38.3
Rhsim08G0027100 Rhododendron simsii HOM05D011412 ORTHO05D009969 2.4e-13 79.3 124 39.5
Actinidia20182 Actinidia chinensis HOM05D011412 ORTHO05D009969 3.2e-13 79.0 139 33.1
PGSC0003DMG400016835 Solanum tuberosum HOM05D009853 ORTHO05D009969 3.2e-13 79.0 124 35.5
Sopen01g046270 Solanum pennellii HOM05D000600 ORTHO05D000432 4.2e-13 78.6 111 38.7
PGSC0003DMG400036234 Solanum tuberosum HOM05D009853 ORTHO05D009969 4.2e-13 78.6 124 37.9
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 7.1e-13 77.8 118 35.6
CSS0020150 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 7.1e-13 77.8 129 36.4
Solyc06g071300.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 7.1e-13 77.8 125 36.8
Sopen05g008160 Solanum pennellii HOM05D013339 ORTHO05D009969 9.3e-13 77.4 118 38.1
PGSC0003DMG400007682 Solanum tuberosum HOM05D013339 ORTHO05D009969 9.3e-13 77.4 120 37.5
CSS0039249 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.2e-12 77.0 134 34.3
CSS0026794 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.6e-12 76.6 135 35.6
Solyc01g103870.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 1.6e-12 76.6 110 35.5
CSS0003429 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 6.0e-12 74.7 134 33.6
Sopen06g027600 Solanum pennellii HOM05D009853 ORTHO05D009969 1.0e-11 73.9 130 33.1
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 1.8e-11 73.2 61 50.8
Dinv30482 Davidia involucrata HOM05D009853 ORTHO05D009969 1.8e-11 73.2 121 33.1
vmacro23014 Vaccinium macrocarpon HOM05D011412 ORTHO05D009969 1.8e-11 73.2 151 33.1
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 3.0e-11 72.4 124 37.1
Rhsim08G0215000 Rhododendron simsii HOM05D011412 ORTHO05D009969 3.9e-11 72.0 71 47.9
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 8.7e-11 70.9 68 44.1
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 1.5e-10 70.1 166 31.3
Dinv38023 Davidia involucrata HOM05D011412 ORTHO05D009969 1.5e-10 70.1 129 32.6
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 5.6e-10 68.2 81 42.0
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 1.3e-09 67.0 139 31.7
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 1.6e-09 66.6 131 30.5
CSS0013985 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.1e-09 66.2 128 32.8
Rhsim07G0189200 Rhododendron simsii HOM05D009853 ORTHO05D009969 2.1e-09 66.2 127 32.3
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 2.8e-09 65.9 66 43.9
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 4.8e-09 65.1 106 37.7
CSS0048320 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 4.8e-09 65.1 136 32.4
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 4.8e-09 65.1 129 27.1
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 6.2e-09 64.7 127 28.3
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.2e-09 64.7 71 42.3
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.2e-09 64.7 71 42.3
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.2e-09 64.7 71 42.3
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 8.2e-09 64.3 110 38.2
PGSC0003DMG400035438 Solanum tuberosum HOM05D009853 ORTHO05D009969 8.2e-09 64.3 101 34.7
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 1.4e-08 63.5 58 44.8
Nitab4.5_0002698g0090 Nicotiana tabacum HOM05D009853 ORTHO05D009969 1.4e-08 63.5 97 35.1
Nitab4.5_0007355g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 1.4e-08 63.5 109 35.8
CSS0025868 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.8e-08 63.2 127 31.5
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 1.8e-08 63.2 136 31.6
Rhsim08G0003700 Rhododendron simsii HOM05D000307 ORTHO05D000166 1.8e-08 63.2 156 25.6
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.4e-08 62.8 110 37.3
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 3.1e-08 62.4 126 28.6
Nitab4.5_0000167g0220 Nicotiana tabacum HOM05D000307 ORTHO05D000166 3.1e-08 62.4 109 35.8
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 4.0e-08 62.0 145 26.9
TWI56G0608 Tripterygium wilfordii HOM05D062112 ORTHO05D009969 4.0e-08 62.0 131 29.8
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.3e-08 61.6 143 29.4
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.3e-08 61.6 118 33.9
CSS0047056 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.3e-08 61.6 157 31.8
Nitab4.5_0000365g0070 Nicotiana tabacum HOM05D000307 ORTHO05D000166 5.3e-08 61.6 109 34.9
Rhsim04G0216100 Rhododendron simsii HOM05D011412 ORTHO05D009969 6.9e-08 61.2 112 30.4
PGSC0003DMG400039282 Solanum tuberosum HOM05D009853 ORTHO05D009969 6.9e-08 61.2 96 33.3
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 9.0e-08 60.8 137 30.7
Peaxi162Scf01312g00064 Petunia axillaris HOM05D000628 ORTHO05D009969 9.0e-08 60.8 63 49.2
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.2e-07 60.5 130 33.1
Aqoxy5G00368 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 2.0e-07 59.7 72 47.2
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.4e-07 58.9 138 28.3
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.4e-07 58.9 76 35.5
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 3.4e-07 58.9 66 37.9
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.4e-07 58.9 130 33.1
TAR625G0700 Trochodendron aralioides HOM05D000307 ORTHO05D000166 3.4e-07 58.9 73 38.4
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 4.5e-07 58.5 130 27.7
Nitab4.5_0000075g0290 Nicotiana tabacum HOM05D009853 ORTHO05D009969 4.5e-07 58.5 38 57.9
Nitab4.5_0006602g0030 Nicotiana tabacum HOM05D038292 ORTHO05D009969 4.5e-07 58.5 112 31.2
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.8e-07 58.2 140 27.9
CSS0020566 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 5.8e-07 58.2 117 29.9
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.8e-07 58.2 76 35.5
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.8e-07 58.2 76 35.5
HanXRQChr15g0479251 Helianthus annuus HOM05D000307 ORTHO05D000166 5.8e-07 58.2 58 43.1
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 7.6e-07 57.8 126 25.4
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 7.6e-07 57.8 138 29.7
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 7.6e-07 57.8 138 29.7
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.6e-07 57.8 76 35.5
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.6e-07 57.8 76 35.5
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.6e-07 57.8 76 35.5
CSS0029060 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.6e-07 57.8 157 30.6
Oeu050185.1 Olea europaea HOM05D011412 ORTHO05D009969 7.6e-07 57.8 56 48.2
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 7.6e-07 57.8 67 37.3
TWI14G1072 Tripterygium wilfordii HOM05D062112 ORTHO05D009969 7.6e-07 57.8 70 38.6
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 1.0e-06 57.4 55 43.6
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 1.0e-06 57.4 53 43.4
Lj1C1007T18 Lonicera japonica HOM05D000307 ORTHO05D000166 1.0e-06 57.4 89 39.3
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-06 57.0 87 35.6
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 1.3e-06 57.0 67 41.8
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-06 57.0 76 34.2
HanXRQChr15g0479261 Helianthus annuus HOM05D000307 ORTHO05D000166 1.3e-06 57.0 110 32.7
HanXRQChr15g0479301 Helianthus annuus HOM05D000307 ORTHO05D000166 1.3e-06 57.0 110 32.7
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-06 56.6 70 34.3
Prupe.6G121600 Prunus persica HOM05D020328 ORTHO05D030515 1.7e-06 56.6 69 37.7
TWI60G0236 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 1.7e-06 56.6 73 41.1
Atru.chr8.2490 Acer truncatum HOM05D000307 ORTHO05D000166 2.2e-06 56.2 66 40.9
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 2.2e-06 56.2 123 28.5
CANSAT25G2697 Cannabis sativa HOM05D000307 ORTHO05D000166 2.2e-06 56.2 69 39.1
ClCG05G012100 Citrullus lanatus HOM05D000307 ORTHO05D000166 2.2e-06 56.2 138 31.2
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 2.2e-06 56.2 88 38.6
Actinidia09597 Actinidia chinensis HOM05D002537 ORTHO05D002751 2.9e-06 55.8 73 38.4
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.9e-06 55.8 81 33.3
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 2.9e-06 55.8 104 31.7
CSS0029498 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.9e-06 55.8 155 29.0
Potri.015G077800 Populus trichocarpa HOM05D006887 ORTHO05D009969 2.9e-06 55.8 62 41.9
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 2.9e-06 55.8 76 35.5
Sabra10G0187100 Salix brachista HOM05D015295 ORTHO05D009969 2.9e-06 55.8 75 37.3
Sopen11g010690 Solanum pennellii HOM05D000307 ORTHO05D000166 2.9e-06 55.8 59 40.7
SGA_v2.0_scaffold304G47921 Striga asiatica HOM05D000307 ORTHO05D000166 2.9e-06 55.8 67 37.3
THA.LOC104806918 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.9e-06 55.8 142 27.5
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 3.8e-06 55.5 69 36.2
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 3.8e-06 55.5 53 41.5
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 3.8e-06 55.5 53 41.5
Potri.008G020300 Populus trichocarpa HOM05D015295 ORTHO05D009969 3.8e-06 55.5 58 39.7
Potri.010G238900 Populus trichocarpa HOM05D015295 ORTHO05D009969 3.8e-06 55.5 67 37.3
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 3.8e-06 55.5 60 40.0
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.9e-06 55.1 143 26.6
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 4.9e-06 55.1 70 35.7
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 4.9e-06 55.1 55 41.8
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 4.9e-06 55.1 55 41.8
CARHR255540 Cardamine hirsuta HOM05D000307 ORTHO05D000166 4.9e-06 55.1 81 35.8
AUR62002527 Chenopodium quinoa HOM05D000307 ORTHO05D000166 4.9e-06 55.1 105 33.3
TPR.G37782 Trifolium pratense HOM05D000307 ORTHO05D000166 4.9e-06 55.1 67 46.3
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 6.5e-06 54.7 55 43.6
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 6.5e-06 54.7 53 41.5
Peaxi162Scf00076g01010 Petunia axillaris HOM05D000307 ORTHO05D000166 6.5e-06 54.7 149 28.2
Prupe.6G121700 Prunus persica HOM05D020328 ORTHO05D030515 6.5e-06 54.7 69 36.2
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 6.5e-06 54.7 73 34.2
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 8.4e-06 54.3 55 43.6
Cc02_g23180 Coffea canephora HOM05D000307 ORTHO05D000166 8.4e-06 54.3 68 41.2
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 8.4e-06 54.3 111 31.5
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 8.4e-06 54.3 111 31.5
Sabra15G0102400 Salix brachista HOM05D006887 ORTHO05D009969 8.4e-06 54.3 62 40.3
TPR.G26403 Trifolium pratense HOM05D008089 ORTHO05D000166 8.4e-06 54.3 114 32.5
TAR362G0722 Trochodendron aralioides HOM05D000307 ORTHO05D000166 8.4e-06 54.3 73 37.0
TAR362G1158 Trochodendron aralioides HOM05D000307 ORTHO05D000166 8.4e-06 54.3 73 37.0
TAR625G0022 Trochodendron aralioides HOM05D000307 ORTHO05D000166 8.4e-06 54.3 120 33.3


User provided reference genes

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