Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028590.1 Olea europaea HOM05D001342 ORTHO05D287461 2.2e-45 185.3 94 100.0
Os07g0108300 Oryza sativa ssp. japonica HOM05D001342 ORTHO05D001286 4.1e-15 84.7 72 62.5
Hma1.2p1_0223F.1_g094110 Hydrangea macrophylla HOM05D001342 ORTHO05D001286 1.2e-14 83.2 72 62.5
TWI18G1243 Tripterygium wilfordii HOM05D001342 ORTHO05D001286 1.2e-14 83.2 71 63.4
Zm00001eb298440 Zea mays HOM05D001342 ORTHO05D001286 1.2e-14 83.2 71 63.4
Zm00001eb118240 Zea mays HOM05D001342 ORTHO05D001286 1.5e-14 82.8 71 63.4
Peaxi162Scf00021g00192 Petunia axillaris HOM05D001342 ORTHO05D001286 2.6e-14 82.0 71 62.0
Prupe.1G243000 Prunus persica HOM05D001342 ORTHO05D001286 2.6e-14 82.0 71 63.4
VMungo1215G3017 Vigna mungo HOM05D001342 ORTHO05D001286 2.6e-14 82.0 71 63.4
CAN.G282.55 Capsicum annuum HOM05D001342 ORTHO05D001286 3.4e-14 81.6 71 60.6
Cpa.g.sc33.7 Carica papaya HOM05D001342 ORTHO05D001286 3.4e-14 81.6 76 59.2
COL.COLO4_24248 Corchorus olitorius HOM05D001342 ORTHO05D001286 3.4e-14 81.6 71 63.4
Manes.12G024100 Manihot esculenta HOM05D001342 ORTHO05D001286 3.4e-14 81.6 71 63.4
Lalb_Chr05g0216601 Lupinus albus HOM05D001342 ORTHO05D001286 4.5e-14 81.3 74 60.8
SGA_v2.0_scaffold8G04190 Striga asiatica HOM05D001342 ORTHO05D001286 4.5e-14 81.3 74 60.8
AUR62024293 Chenopodium quinoa HOM05D001342 ORTHO05D001286 5.9e-14 80.9 74 60.8
Lalb_Chr09g0326161 Lupinus albus HOM05D001342 ORTHO05D001286 5.9e-14 80.9 74 60.8
GSVIVG01004084001 Vitis vinifera HOM05D001342 ORTHO05D001286 5.9e-14 80.9 71 62.0
Actinidia15083 Actinidia chinensis HOM05D001342 ORTHO05D001286 7.7e-14 80.5 71 62.0
CSS0018348 Camellia sinensis var. sinensis HOM05D001342 ORTHO05D001286 7.7e-14 80.5 71 62.0
CSS0043419 Camellia sinensis var. sinensis HOM05D001342 ORTHO05D001286 7.7e-14 80.5 71 59.2
AUR62005448 Chenopodium quinoa HOM05D001342 ORTHO05D001286 7.7e-14 80.5 74 60.8
Cc11_g15580 Coffea canephora HOM05D001342 ORTHO05D001286 7.7e-14 80.5 71 62.0
PGR119G0041 Punica granatum HOM05D001342 ORTHO05D001286 7.7e-14 80.5 71 62.0
MSTRG.7919 Avicennia marina HOM05D001342 ORTHO05D001286 1.0e-13 80.1 71 62.0
Ciclev10031381m.g Citrus clementina HOM05D001342 ORTHO05D001286 1.0e-13 80.1 71 62.0
Haze_12238 Corylus avellana HOM05D001342 ORTHO05D001286 1.0e-13 80.1 71 62.0
MD13G1102800 Malus domestica HOM05D001342 ORTHO05D001286 1.0e-13 80.1 71 62.0
MD16G1103000 Malus domestica HOM05D001342 ORTHO05D001286 1.0e-13 80.1 74 59.5
CiPaw.05G183300 Carya illinoinensis HOM05D001342 ORTHO05D001286 1.3e-13 79.7 71 62.0
Duzib251G0743 Durio zibethinus HOM05D001342 ORTHO05D001286 1.3e-13 79.7 71 60.6
HanXRQChr08g0208091 Helianthus annuus HOM05D001342 ORTHO05D001286 1.3e-13 79.7 76 57.9
Hund06022 Selenicereus undatus HOM05D001342 ORTHO05D001286 1.3e-13 79.7 71 62.0
Hund25384 Selenicereus undatus HOM05D001342 ORTHO05D001286 1.3e-13 79.7 71 62.0
SGA_v2.0_scaffold228G43270 Striga asiatica HOM05D001342 ORTHO05D001286 1.3e-13 79.7 74 59.5
Thecc.02G257900 Theobroma cacao HOM05D001342 ORTHO05D001286 1.3e-13 79.7 71 62.0
TWI36G0849 Tripterygium wilfordii HOM05D001342 ORTHO05D001286 1.3e-13 79.7 71 60.6
unitig_749.g13277 Utricularia gibba HOM05D001342 ORTHO05D001286 1.3e-13 79.7 71 62.0
Ah.03g133130 Amaranthus hybridus HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 60.6
arahy.Tifrunner.gnm1.ann1.MAU41V Arachis hypogaea HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 62.0
arahy.Tifrunner.gnm1.ann1.RKV2XY Arachis hypogaea HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 62.0
CSS0022394 Camellia sinensis var. sinensis HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 60.6
DCAR_007059 Daucus carota HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 60.6
Migut.L01482 Erythranthe guttata HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 60.6
Lsat_1_v5_gn_8_150760 Lactuca sativa HOM05D001342 ORTHO05D001286 1.7e-13 79.3 74 60.8
Oeu001713.1 Olea europaea HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 62.0
Oeu001714.1 Olea europaea HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 62.0
SalBow8G5007 Salvia bowleyana HOM05D001342 ORTHO05D001286 1.7e-13 79.3 71 62.0
Medtr5g033230 Medicago truncatula HOM05D001342 ORTHO05D001286 2.2e-13 79.0 72 58.3
ATR1154G004 Amborella trichopoda HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
EL10Ac6g13790 Beta vulgaris HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
CSS0040535 Camellia sinensis var. sinensis HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 59.2
ClCG08G017730 Citrullus lanatus HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
CsaV3_5G031200 Cucumis sativus L. HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
DCAR_031149 Daucus carota HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
Duzib268G1209 Durio zibethinus HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
Lj6C811T7 Lonicera japonica HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
MBI10_g00739_MAGBIO Magnolia biondii HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
Manes.13G025700 Manihot esculenta HOM05D001342 ORTHO05D001286 2.9e-13 78.6 72 58.3
Nitab4.5_0000007g0010 Nicotiana tabacum HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
Nitab4.5_0012264g0020 Nicotiana tabacum HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 60.6
PSO541G1077 Papaver somniferum HOM05D001342 ORTHO05D001286 2.9e-13 78.6 74 59.5
PSO675G9156 Papaver somniferum HOM05D001342 ORTHO05D001286 2.9e-13 78.6 74 59.5
Peaxi162Scf00128g00023 Petunia axillaris HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 59.2
Potri.008G187400 Populus trichocarpa HOM05D001342 ORTHO05D001286 2.9e-13 78.6 71 62.0
Aqoxy5G03796 Aquilegia oxysepala HOM05D001342 ORTHO05D001286 3.8e-13 78.2 71 60.6
DCAR_024439 Daucus carota HOM05D001342 ORTHO05D001286 3.8e-13 78.2 71 59.2
Nitab4.5_0000069g0290 Nicotiana tabacum HOM05D001342 ORTHO05D001286 3.8e-13 78.2 71 59.2
Nitab4.5_0012240g0010 Nicotiana tabacum HOM05D001342 ORTHO05D001286 3.8e-13 78.2 71 59.2
PSO832G2040 Papaver somniferum HOM05D001342 ORTHO05D001286 3.8e-13 78.2 71 60.6
TPR.G38783 Trifolium pratense HOM05D001342 ORTHO05D001286 3.8e-13 78.2 71 59.2
vmacro16208 Vaccinium macrocarpon HOM05D001342 ORTHO05D001286 3.8e-13 78.2 71 60.6
HPP92_010220 Vanilla planifolia HOM05D001342 ORTHO05D001286 3.8e-13 78.2 76 55.3
Ca_04578_v3 Cicer arietinum L. HOM05D001342 ORTHO05D001286 5.0e-13 77.8 71 59.2
CsaV3_2G024880 Cucumis sativus L. HOM05D001342 ORTHO05D001286 5.0e-13 77.8 71 59.2
Glyma.02G038100 Glycine max HOM05D001342 ORTHO05D001286 5.0e-13 77.8 71 60.6
Lalb_Chr16g0381981 Lupinus albus HOM05D001342 ORTHO05D001286 5.0e-13 77.8 74 56.8
CiPaw.06G068600 Carya illinoinensis HOM05D001342 ORTHO05D001286 6.5e-13 77.4 71 59.2
Dinv15240 Davidia involucrata HOM05D001342 ORTHO05D001286 6.5e-13 77.4 71 59.2
ECA233G5725 Erigeron canadensis HOM05D001342 ORTHO05D001286 6.5e-13 77.4 71 60.6
Sed0021799 Sechium edule HOM05D001342 ORTHO05D001286 6.5e-13 77.4 71 59.2
Atru.chr11.2115 Acer truncatum HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
Atru.chr11.2131 Acer truncatum HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
ClCG05G025680 Citrullus lanatus HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
MELO3C000117.2 Cucumis melo HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
CsaV3_5G031220 Cucumis sativus L. HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
Glyma.01G026700 Glycine max HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
Gohir.A03G136200 Gossypium hirsutum HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 60.6
Gohir.D02G159500 Gossypium hirsutum HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 60.6
Gorai.005G179600 Gossypium raimondii HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 60.6
Phvul.002G150800 Phaseolus vulgaris HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
Psat1g170560 Pisum sativum HOM05D001342 ORTHO05D001286 8.5e-13 77.0 72 56.9
QL03p058498 Quercus lobata HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
Rhsim12G0112100 Rhododendron simsii HOM05D001342 ORTHO05D001286 8.5e-13 77.0 71 59.2
Solyc01g007940.4 Solanum lycopersicum HOM05D001342 ORTHO05D001286 1.1e-12 76.6 71 57.7
Sopen01g003480 Solanum pennellii HOM05D001342 ORTHO05D001286 1.1e-12 76.6 71 57.7
CANSAT01G0937 Cannabis sativa HOM05D001342 ORTHO05D001286 1.4e-12 76.3 71 59.2
Lj2g0008314 Lotus japonicus HOM05D001342 ORTHO05D001286 1.4e-12 76.3 71 57.7
Potri.010G045100 Populus trichocarpa HOM05D001342 ORTHO05D001286 1.4e-12 76.3 75 56.0
TAR629G3416 Trochodendron aralioides HOM05D001342 ORTHO05D001286 1.4e-12 76.3 71 59.2
MELO3C011959.2 Cucumis melo HOM05D001342 ORTHO05D001286 1.9e-12 75.9 71 57.7
ECA234G3109 Erigeron canadensis HOM05D001342 ORTHO05D001286 2.5e-12 75.5 71 59.2
Sabra10G0023100 Salix brachista HOM05D001342 ORTHO05D001286 2.5e-12 75.5 87 51.7
PGSC0003DMG400016373 Solanum tuberosum HOM05D001342 ORTHO05D001286 2.5e-12 75.5 71 56.3
PGSC0003DMG400018622 Solanum tuberosum HOM05D001342 ORTHO05D001286 2.5e-12 75.5 71 56.3
MELO3C010686.2 Cucumis melo HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 56.3
FvH4_4g25450 Fragaria vesca HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 59.2
FAN07G1387 Fragaria x ananassa HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 59.2
FAN12G0602 Fragaria x ananassa HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 59.2
FAN17G1512 Fragaria x ananassa HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 59.2
FAN22G0797 Fragaria x ananassa HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 59.2
RcHm_v2.0_Chr4g0432761 Rosa chinensis HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 59.2
Sed0023149 Sechium edule HOM05D001342 ORTHO05D001286 3.2e-12 75.1 75 56.0
Sc14g0008710 Simmondsia chinensis HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 56.3
Solyc05g013380.3 Solanum lycopersicum HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 56.3
Sopen05g008170 Solanum pennellii HOM05D001342 ORTHO05D001286 3.2e-12 75.1 71 56.3
AL2G29990 Arabidopsis lyrata HOM05D001342 ORTHO05D001286 4.2e-12 74.7 76 53.9
BraA07t29146Z Brassica rapa HOM05D001342 ORTHO05D001286 5.5e-12 74.3 72 56.9
SEGI_13162 Sequoiadendron giganteum HOM05D001342 ORTHO05D001286 5.5e-12 74.3 71 54.9
BcaB03g11932 Brassica carinata HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
BcaB07g32318 Brassica carinata HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
A08p28240 Brassica napus HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
BolC7t42571H Brassica oleracea HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
BraA08t34755Z Brassica rapa HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
Carub.0001s2290 Capsella rubella HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
Sp1g20750 Schrenkiella parvula HOM05D001342 ORTHO05D001286 7.2e-12 73.9 72 56.9
Aa31LG7G7330 Aethionema arabicum HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
AagrBONN_evm.TU.Sc2ySwM_368.3423 Anthoceros agrestis HOM05D001342 ORTHO05D001286 9.4e-12 73.6 74 55.4
AL1G37100 Arabidopsis lyrata HOM05D001342 ORTHO05D001286 9.4e-12 73.6 72 56.9
AT1G70580 Arabidopsis thaliana HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
BcaB03g14823 Brassica carinata HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
BcaC08g46507 Brassica carinata HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
A09p41450 Brassica napus HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
C05p22520 Brassica napus HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
C06p44570 Brassica napus HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
C08p21830 Brassica napus HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
BolC5t30950H Brassica oleracea HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
BolC8t49822H Brassica oleracea HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
BraA07t31263Z Brassica rapa HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
BraA09t39637Z Brassica rapa HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
Carub.0002s1730 Capsella rubella HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
CARHR023760 Cardamine hirsuta HOM05D001342 ORTHO05D001286 9.4e-12 73.6 72 56.9
CARHR063790 Cardamine hirsuta HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
Thhalv10018474m.g Eutrema salsugineum HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 57.7
Sed0006022 Sechium edule HOM05D001342 ORTHO05D001286 9.4e-12 73.6 71 56.3
THA.LOC104822983 Tarenaya hassleriana HOM05D001342 ORTHO05D001286 1.2e-11 73.2 71 56.3
HPP92_010225 Vanilla planifolia HOM05D001342 ORTHO05D001286 1.2e-11 73.2 76 52.6
AT1G23310 Arabidopsis thaliana HOM05D001342 ORTHO05D001286 1.6e-11 72.8 72 55.6
BcaC06g35032 Brassica carinata HOM05D001342 ORTHO05D001286 2.1e-11 72.4 72 55.6
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 2.1e-11 72.4 72 55.6
BolC6t39521H Brassica oleracea HOM05D001342 ORTHO05D001286 2.1e-11 72.4 71 56.3
DCAR_026518 Daucus carota HOM05D001342 ORTHO05D001286 2.1e-11 72.4 71 54.9
SEGI_17232 Sequoiadendron giganteum HOM05D001342 ORTHO05D001286 2.1e-11 72.4 69 56.5
SEGI_20744 Sequoiadendron giganteum HOM05D001342 ORTHO05D001286 2.1e-11 72.4 69 56.5
BcaC07g39193 Brassica carinata HOM05D001342 ORTHO05D001286 3.6e-11 71.6 71 56.3
Sp5g25730 Schrenkiella parvula HOM05D001342 ORTHO05D001286 4.6e-11 71.2 71 56.3
A07p37000 Brassica napus HOM05D001342 ORTHO05D001286 6.1e-11 70.9 71 56.3
Pp3c16_6730 Physcomitrium patens HOM05D001342 ORTHO05D001286 1.0e-10 70.1 69 56.5
Mapoly0041s0090 Marchantia polymorpha HOM05D001342 ORTHO05D001286 5.1e-10 67.8 72 50.0
Pp3c25_700 Physcomitrium patens HOM05D001342 ORTHO05D001286 6.7e-10 67.4 70 54.3
Pp3c5_10250 Physcomitrium patens HOM05D001342 ORTHO05D001286 6.7e-10 67.4 70 54.3
SMO119G0069 Selaginella moellendorffii HOM05D001342 ORTHO05D001286 8.8e-10 67.0 72 51.4
BraA06t26674Z Brassica rapa HOM05D001342 ORTHO05D001286 2.0e-09 65.9 64 57.8
CDE11G0159 Ceratophyllum demersum HOM05D001342 ORTHO05D001286 6.3e-08 60.8 80 47.5
CBR_g3122 Chara braunii HOM05D001342 ORTHO05D001286 8.2e-08 60.5 71 45.1
Cre10.g451950 Chlamydomonas reinhardtii HOM05D001342 ORTHO05D001286 1.1e-07 60.1 72 47.2
PRCOL_00006762 Prasinoderma coloniale HOM05D001342 ORTHO05D001286 6.9e-07 57.4 71 49.3
BcaC08g47378 Brassica carinata HOM05D001342 ORTHO05D014101 9.1e-07 57.0 71 49.3
Os10g0390500 Oryza sativa ssp. japonica HOM05D001342 ORTHO05D001286 2.6e-06 55.5 71 46.5
C04p28670 Brassica napus HOM05D001342 ORTHO05D001286 3.4e-06 55.1 59 52.5


User provided reference genes

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