Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 5.5e-53 210.7 106 100.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.3e-43 178.7 94 90.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 5.2e-43 177.6 91 92.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.5e-42 176.0 95 89.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.0e-42 175.6 95 89.5
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 3.4e-42 174.9 91 92.3
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.4e-42 174.5 91 91.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.7e-42 174.1 91 91.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 7.5e-42 173.7 95 89.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 9.8e-42 173.3 95 88.4
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 9.8e-42 173.3 95 88.4
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-41 172.9 91 91.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.3e-41 172.9 95 88.4
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.3e-41 172.9 95 88.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.3e-41 172.9 95 88.4
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.3e-41 172.9 92 91.3
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 3.7e-41 171.4 91 90.1
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 4.9e-41 171.0 91 91.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 6.3e-41 170.6 91 89.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 6.3e-41 170.6 91 90.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 6.3e-41 170.6 91 91.2
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 6.3e-41 170.6 91 90.1
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 8.3e-41 170.2 90 88.9
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.1e-40 169.9 98 85.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.1e-40 169.9 91 91.2
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.1e-40 169.9 91 91.2
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.1e-40 169.9 90 92.2
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.4e-40 169.5 90 92.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.8e-40 169.1 91 87.9
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.8e-40 169.1 91 91.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.8e-40 169.1 90 91.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.8e-40 169.1 91 91.2
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.8e-40 169.1 91 90.1
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.4e-40 168.7 95 88.4
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 2.4e-40 168.7 91 87.9
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.4e-40 168.7 90 88.9
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 3.1e-40 168.3 90 92.2
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.1e-40 168.3 90 88.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 4.1e-40 167.9 91 89.0
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 4.1e-40 167.9 93 86.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.1e-40 167.9 90 88.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 5.4e-40 167.5 90 87.8
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.4e-40 167.5 90 91.1
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.4e-40 167.5 90 91.1
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 7.0e-40 167.2 91 87.9
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 7.0e-40 167.2 91 89.0
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 9.2e-40 166.8 95 86.3
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.2e-39 166.4 90 88.9
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.2e-39 166.4 90 88.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.2e-39 166.4 91 84.6
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.6e-39 166.0 90 88.9
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.6e-39 166.0 91 89.0
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.6e-39 166.0 90 87.8
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.6e-39 166.0 90 88.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.6e-39 166.0 91 90.1
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.6e-39 166.0 95 85.3
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.0e-39 165.6 95 87.4
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.0e-39 165.6 90 87.8
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.0e-39 165.6 91 87.9
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.0e-39 165.6 90 90.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.0e-39 165.6 90 90.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 2.7e-39 165.2 90 86.7
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.7e-39 165.2 90 86.7
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.7e-39 165.2 90 86.7
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.7e-39 165.2 91 86.8
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.5e-39 164.9 91 86.8
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.5e-39 164.9 91 86.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.5e-39 164.9 98 81.6
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.5e-39 164.9 90 88.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.5e-39 164.9 91 87.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.5e-39 164.5 91 86.8
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 4.5e-39 164.5 91 86.8
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.9e-39 164.1 90 87.8
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 5.9e-39 164.1 90 85.6
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.9e-39 164.1 90 86.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 7.8e-39 163.7 95 82.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 7.8e-39 163.7 90 85.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 7.8e-39 163.7 95 86.3
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-38 163.3 91 85.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-38 163.3 91 85.7
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.0e-38 163.3 91 85.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.0e-38 163.3 91 85.7
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.0e-38 163.3 90 86.7
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.7e-38 162.5 90 85.6
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.7e-38 162.5 90 87.8
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.7e-38 162.5 90 84.4
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.7e-38 162.5 90 84.4
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 2.3e-38 162.2 90 86.7
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.3e-38 162.2 90 86.7
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.9e-38 161.8 90 84.4
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.9e-38 161.8 91 84.6
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.9e-38 161.8 90 85.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.9e-38 161.8 91 84.6
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 3.8e-38 161.4 91 84.6
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 5.0e-38 161.0 91 82.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 6.6e-38 160.6 91 84.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 6.6e-38 160.6 90 85.6
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.5e-37 159.5 90 85.6
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.5e-37 158.7 89 84.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.3e-37 158.3 90 84.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.3e-37 158.3 95 83.2
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 4.3e-37 157.9 91 81.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.6e-37 157.5 91 81.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.6e-37 157.5 90 84.4
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.2e-36 156.4 116 71.6
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.2e-36 156.4 91 81.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.1e-36 155.6 91 82.4
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.8e-36 155.2 96 81.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 3.6e-36 154.8 91 82.4
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.7e-36 154.5 91 79.1
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.7e-36 154.5 90 82.2
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 6.1e-36 154.1 91 81.3
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 3.0e-35 151.8 90 81.1
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.0e-35 151.4 91 79.1
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 4.0e-35 151.4 91 79.1
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.2e-34 149.8 91 76.9
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.0e-34 149.1 90 80.0
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 7.5e-34 147.1 92 72.8
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 9.8e-34 146.7 123 62.6
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-33 146.4 91 76.9
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-33 146.4 84 81.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.7e-33 146.0 112 67.0
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.9e-33 145.2 90 80.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 4.9e-33 144.4 89 79.8
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.1e-32 143.3 92 76.1
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.8e-32 142.5 87 78.2
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.7e-31 138.7 92 75.0
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.6e-31 137.9 75 88.0
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-29 132.9 72 90.3
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 9.5e-29 130.2 90 72.2
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.2e-27 124.4 109 58.7
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 9.2e-24 113.6 58 91.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.5e-21 105.5 61 82.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.2e-20 103.2 50 94.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.6e-20 101.7 73 68.5
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.8e-19 99.4 60 78.3
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.3e-17 93.2 49 83.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.7e-17 91.7 49 83.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.7e-14 82.8 45 77.8
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 6.6e-14 80.9 68 54.4
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.4e-10 68.2 89 43.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.8e-09 65.1 94 37.2
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.7e-07 58.9 79 39.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-06 57.0 45 71.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 3.9e-06 55.1 70 40.0


User provided reference genes

Program Settings