Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 0.0e+00 1093.6 549 100.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.2e-228 796.6 513 78.6
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 5.9e-223 777.7 492 78.3
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.2e-221 770.8 492 75.8
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 9.4e-221 770.4 483 77.0
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.7e-220 768.8 489 77.3
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.1e-219 764.6 487 75.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 8.8e-219 763.8 548 70.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.0e-218 762.7 543 70.5
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.0e-218 762.7 559 68.3
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.8e-217 758.1 491 74.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.8e-216 756.1 543 69.8
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.1e-216 755.4 502 73.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 4.1e-216 755.0 530 69.8
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 4.1e-216 755.0 484 76.2
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 5.3e-216 754.6 558 69.2
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 7.0e-216 754.2 473 77.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.2e-215 753.4 497 73.2
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 7.7e-215 750.7 543 69.1
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.0e-214 750.4 473 77.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.0e-214 750.4 492 74.4
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.2e-214 749.2 542 71.2
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.8e-214 748.4 477 76.9
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 2.5e-213 745.7 478 76.6
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.2e-213 745.3 510 73.5
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 4.2e-213 745.0 520 70.8
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.0e-211 738.8 484 74.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 3.9e-211 738.4 549 68.7
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 8.8e-211 737.3 492 73.4
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.1e-210 736.9 492 72.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.7e-210 734.6 469 76.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 7.4e-210 734.2 488 73.2
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.2e-209 732.6 543 68.9
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.8e-209 732.3 468 76.3
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.4e-208 729.2 570 65.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 9.1e-208 727.2 494 71.5
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.2e-206 722.6 494 72.1
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.9e-206 722.2 492 71.3
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 8.5e-206 720.7 524 70.8
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 9.4e-205 717.2 491 72.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.7e-204 715.7 511 70.3
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 8.0e-204 714.1 526 66.3
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.4e-203 713.4 555 66.1
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.8e-203 713.0 574 64.8
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.3e-203 712.6 504 70.0
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 4.0e-203 711.8 553 66.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 5.2e-203 711.4 538 66.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.2e-202 710.3 559 64.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.3e-202 708.8 475 71.4
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 5.7e-202 708.0 578 64.0
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 5.7e-202 708.0 457 75.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.7e-202 707.2 547 66.2
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.8e-201 705.7 550 66.2
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 6.3e-201 704.5 473 71.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 9.1e-200 700.7 471 70.9
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 9.1e-200 700.7 544 66.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-199 700.3 538 67.3
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.2e-199 700.3 540 64.8
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.2e-199 700.3 544 66.0
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.0e-199 699.5 471 71.5
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.7e-199 699.1 475 71.2
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 5.9e-199 698.0 614 60.4
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.7e-198 696.4 550 65.8
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 6.5e-198 694.5 479 69.3
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 6.5e-198 694.5 541 66.2
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.5e-197 693.3 501 68.1
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.5e-197 692.6 498 69.5
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.5e-197 692.6 475 69.5
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-197 692.6 475 69.5
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-197 692.6 530 64.7
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.2e-197 691.8 492 67.3
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 5.5e-197 691.4 475 69.3
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 7.2e-197 691.0 474 70.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.2e-197 691.0 471 72.2
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 7.2e-197 691.0 534 64.8
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 7.2e-197 691.0 469 71.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 9.4e-197 690.6 469 72.9
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 9.4e-197 690.6 466 71.5
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.1e-196 689.5 497 67.4
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.6e-196 688.7 504 66.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 3.6e-196 688.7 512 66.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 4.7e-196 688.3 482 68.7
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 8.0e-196 687.6 550 63.1
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.0e-195 687.2 474 70.0
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.0e-195 687.2 529 65.2
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-195 686.8 482 68.5
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.3e-195 686.0 487 69.0
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.5e-194 683.3 473 72.5
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.2e-193 679.5 487 70.0
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.8e-193 679.1 581 60.8
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.8e-193 679.1 499 67.5
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-192 677.2 519 64.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.8e-192 676.4 467 70.4
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.1e-192 675.2 538 65.6
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.4e-192 674.9 540 62.8
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.0e-191 672.9 547 62.7
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.5e-191 672.2 553 63.7
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.5e-191 671.8 481 67.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-190 670.6 553 63.7
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.1e-189 667.2 561 60.6
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 3.3e-189 665.6 530 63.0
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 9.5e-189 664.1 530 63.0
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.1e-188 662.9 552 63.2
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.4e-187 660.2 471 68.6
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-186 657.1 461 69.4
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.3e-185 651.4 458 68.1
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 5.9e-183 644.8 523 62.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 3.1e-179 632.5 474 65.6
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-178 630.6 552 60.5
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 2.9e-177 625.9 641 53.7
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.7e-175 619.4 551 61.7
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 3.5e-175 619.0 537 60.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.1e-173 614.0 464 63.8
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.6e-172 609.0 565 58.8
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-169 600.5 366 79.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 6.4e-169 598.2 501 62.9
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 6.2e-164 581.6 363 78.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.6e-159 567.0 538 56.1
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.2e-153 546.6 390 67.7
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.7e-150 537.0 497 59.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.8e-148 529.6 362 74.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.2e-145 520.0 457 55.6
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.1e-143 513.5 361 70.6
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 6.9e-139 498.4 471 51.6
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.5e-138 497.3 494 52.2
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-135 486.5 559 49.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 4.3e-133 479.2 324 71.6
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 6.9e-131 471.9 381 63.8
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 8.4e-129 464.9 348 67.0
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.5e-128 462.2 289 76.8
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.9e-113 413.3 348 63.2
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.9e-110 402.9 243 78.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.4e-106 389.8 479 45.3
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.2e-105 387.1 293 67.9
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-103 381.3 282 66.0
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.7e-103 380.2 485 44.7
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 8.5e-97 358.6 215 77.2
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.2e-95 354.8 305 61.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.3e-94 350.5 231 75.3
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.8e-92 343.6 219 74.9
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.0e-89 332.8 311 59.2
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.1e-87 327.4 212 72.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 7.5e-85 318.9 454 40.3
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-81 308.5 319 50.2
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.3e-76 289.3 184 77.7
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.1e-75 288.5 201 68.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 5.0e-73 279.6 263 54.0
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.4e-70 271.6 470 35.5
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.4e-67 260.8 277 53.4
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 2.4e-67 260.8 177 72.9
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.3e-64 250.4 488 36.1
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.0e-58 231.1 184 66.3
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.7e-52 211.5 147 72.1
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.1e-51 206.8 185 57.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.0e-50 203.0 284 44.7
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.4e-43 181.0 126 62.7
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.2e-43 180.6 114 72.8
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.3e-40 170.6 137 60.6
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.4e-38 165.2 124 60.5
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-33 147.9 155 49.7
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 6.6e-33 146.4 92 71.7
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 9.6e-32 142.5 323 34.7
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-31 142.1 80 83.8
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 4.8e-31 140.2 88 72.7
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.1e-30 137.5 81 76.5
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.0e-29 134.8 322 32.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.8e-28 130.6 76 80.3
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.5e-26 124.0 77 75.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.3e-25 122.1 102 62.7
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 9.6e-24 115.9 134 50.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 4.0e-22 110.5 84 63.1
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 9.0e-22 109.4 63 79.4
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 2.0e-21 108.2 61 82.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.2e-20 104.8 96 53.1
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 4.9e-20 103.6 57 77.2
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 7.1e-19 99.8 83 61.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-18 98.2 64 65.6
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 3.5e-18 97.4 80 50.0
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.3e-17 95.5 80 60.0
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 6.7e-17 93.2 55 72.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 7.6e-13 79.7 48 79.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-11 75.1 156 37.2
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-10 71.6 51 62.7
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.3e-08 64.3 112 38.4
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.1e-06 57.4 176 30.7


User provided reference genes

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