Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 5.9e-106 387.5 189 100.0
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.1e-95 352.4 189 89.9
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.2e-93 346.7 188 87.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 3.3e-93 345.1 189 88.4
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.1e-91 340.1 189 86.8
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.4e-91 339.7 189 86.2
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.0e-90 335.9 189 87.3
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.3e-89 333.2 189 85.7
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 3.8e-89 331.6 189 85.7
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.9e-88 329.3 189 84.7
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.9e-88 329.3 189 84.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.5e-88 328.9 189 85.2
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 189 84.7
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.2e-87 326.6 189 84.1
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 8.0e-87 323.9 189 83.1
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.0e-86 322.0 189 83.1
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.5e-85 319.7 189 82.5
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.5e-85 319.7 189 82.5
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.5e-85 319.7 189 82.5
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 189 82.5
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.0e-85 319.3 189 82.5
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.6e-85 318.9 189 81.5
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.6e-85 318.9 189 82.0
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 5.7e-85 317.8 189 82.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 5.7e-85 317.8 189 81.5
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.8e-84 315.5 189 79.9
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.7e-84 315.1 189 81.0
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 3.7e-84 315.1 189 80.4
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 189 80.4
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 6.3e-84 314.3 189 81.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-83 313.5 189 81.0
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.8e-83 312.8 189 79.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.8e-83 312.8 189 79.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.8e-83 312.8 189 79.4
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.4e-83 312.4 189 80.4
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 4.1e-83 311.6 189 79.4
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 4.1e-83 311.6 189 79.9
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 4.1e-83 311.6 189 79.4
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.1e-83 311.6 189 78.8
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 5.4e-83 311.2 189 79.9
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 5.4e-83 311.2 189 79.9
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 5.4e-83 311.2 189 79.9
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.4e-83 311.2 189 79.9
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 9.1e-83 310.5 189 79.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.1e-83 310.5 189 79.4
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 9.1e-83 310.5 189 78.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 79.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 78.8
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 79.9
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 78.8
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 79.9
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 78.8
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.6e-82 309.7 189 78.8
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.6e-82 309.7 189 78.8
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.0e-82 309.3 189 79.9
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 2.0e-82 309.3 189 79.9
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 2.7e-82 308.9 189 79.4
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 2.7e-82 308.9 189 79.4
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 2.7e-82 308.9 189 79.4
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 2.7e-82 308.9 181 82.9
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 78.8
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 79.4
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 79.4
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 4.5e-82 308.1 189 79.4
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 4.5e-82 308.1 189 79.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 79.4
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 78.8
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 7.7e-82 307.4 189 78.8
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 7.7e-82 307.4 189 78.8
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 78.3
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 78.8
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 78.8
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 78.8
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 79.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 78.3
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.7e-81 306.2 189 79.4
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 78.3
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 78.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 3.8e-81 305.1 191 79.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 3.8e-81 305.1 191 79.1
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 77.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 77.2
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 77.8
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 77.2
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 77.2
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 78.3
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 77.7
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 77.8
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 78.8
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 78.8
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 77.2
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 77.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 77.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 77.8
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.9e-80 302.8 189 76.2
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.5e-80 302.4 187 77.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 5.5e-80 301.2 187 77.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 78.3
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 2.8e-79 298.9 187 76.5
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.6e-79 298.5 187 76.5
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.6e-79 298.5 187 76.5
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 77.8
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 76.7
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 75.1
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 75.7
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.0e-78 297.0 189 75.1
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 77.2
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 75.1
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 75.7
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.0e-78 295.4 187 75.9
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 75.1
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 6.8e-78 294.3 189 74.6
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 8.9e-78 293.9 180 78.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 75.1
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.6e-77 292.4 189 75.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 5.7e-77 291.2 189 74.1
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 9.8e-77 290.4 191 74.9
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.3e-76 290.0 189 75.7
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.3e-76 290.0 189 73.5
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.7e-76 289.7 191 74.3
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 8.3e-76 287.3 189 74.1
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.4e-75 286.6 181 74.6
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.6e-74 283.1 189 74.1
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.0e-74 282.7 189 75.1
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.6e-73 277.7 175 76.6
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.1e-72 276.9 170 78.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 2.3e-70 269.2 180 73.3
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 6.8e-70 267.7 180 72.2
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.6e-69 265.8 189 69.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.6e-69 265.8 189 68.3
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.6e-69 265.8 189 68.3
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 2.2e-68 262.7 189 68.3
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 3.2e-67 258.8 189 70.9
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.2e-67 257.3 189 69.8
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 4.6e-66 255.0 189 64.6
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 6.0e-66 254.6 189 69.3
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 2.3e-65 252.7 189 67.2
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 6.6e-65 251.1 188 63.8
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 8.6e-65 250.8 188 63.8
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-64 250.0 178 70.2
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.6e-63 246.5 188 63.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.1e-63 246.1 190 63.2
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 7.8e-58 227.6 182 63.7
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.0e-57 227.3 189 57.1
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 8.6e-57 224.2 115 93.9
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 2.1e-55 219.5 178 60.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.7e-52 209.9 189 60.8
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 5.4e-51 204.9 166 66.3
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 9.5e-48 194.1 188 52.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-40 170.2 120 67.5
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 9.6e-40 167.5 109 76.1
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.5e-37 160.2 174 54.6
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.6e-37 157.9 189 49.2
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 8.4e-36 154.5 85 87.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.4e-35 153.7 123 65.0
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 4.2e-35 152.1 124 63.7
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 2.9e-28 129.4 78 75.6
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 5.3e-22 108.6 91 62.6
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.2e-21 107.5 65 75.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 3.9e-09 65.9 35 85.7
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.5e-08 63.9 39 71.8


User provided reference genes

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