Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 3.5e-61 238.0 115 100.0
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 2.4e-57 225.3 115 93.9
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.5e-51 206.1 115 86.1
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.5e-51 205.3 115 86.1
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.5e-51 205.3 114 85.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 2.8e-50 201.8 115 83.5
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 6.2e-50 200.7 115 84.3
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 8.1e-50 200.3 115 83.5
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 6.9e-49 197.2 115 81.7
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.6e-48 195.3 115 81.7
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.6e-48 195.3 115 81.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 5.8e-48 194.1 115 79.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 5.8e-48 194.1 115 80.9
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 7.6e-48 193.7 115 81.7
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 7.6e-48 193.7 115 80.0
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.3e-47 193.0 115 80.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 2.2e-47 192.2 115 80.0
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.2e-47 192.2 115 80.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.2e-47 192.2 115 80.0
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.9e-47 191.8 115 80.0
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.9e-47 191.8 115 80.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.8e-47 191.4 115 79.1
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 6.4e-47 190.7 115 79.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.4e-46 189.5 115 77.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.9e-46 189.1 115 77.4
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.4e-46 188.7 115 77.4
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.4e-46 188.7 115 79.1
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.2e-46 188.3 115 77.4
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 3.2e-46 188.3 115 78.3
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.2e-46 188.0 115 77.4
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 4.2e-46 188.0 115 76.5
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.4e-46 187.6 115 77.4
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 7.1e-46 187.2 115 77.4
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.2e-45 186.4 115 77.4
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.2e-45 186.4 115 77.4
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.6e-45 186.0 115 76.5
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.1e-45 185.7 115 74.8
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 2.7e-45 185.3 115 74.8
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 4.6e-45 184.5 115 74.8
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.6e-45 184.5 114 76.3
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.9e-45 183.7 115 74.8
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.9e-45 183.7 115 75.7
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.0e-44 183.3 115 74.8
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.3e-44 183.0 115 74.8
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.3e-44 183.0 115 74.8
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.3e-44 183.0 115 74.8
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.3e-44 183.0 115 74.8
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.3e-44 183.0 115 74.8
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.3e-44 183.0 115 74.8
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.7e-44 182.6 115 73.9
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.7e-44 182.6 115 75.7
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.7e-44 182.6 114 73.7
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.7e-44 182.6 115 75.7
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.7e-44 182.6 115 75.7
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 2.3e-44 182.2 115 73.9
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.3e-44 182.2 115 73.9
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 3.0e-44 181.8 115 73.9
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.0e-44 181.8 115 76.5
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 3.0e-44 181.8 115 72.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 3.0e-44 181.8 115 74.8
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 3.0e-44 181.8 115 73.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 3.0e-44 181.8 115 73.0
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.9e-44 181.4 114 76.3
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 3.9e-44 181.4 115 74.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 3.9e-44 181.4 115 74.8
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 3.9e-44 181.4 115 74.8
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 3.9e-44 181.4 115 74.8
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 3.9e-44 181.4 115 74.8
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 3.9e-44 181.4 115 74.8
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.9e-44 181.4 115 74.8
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 5.1e-44 181.0 115 74.8
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 6.6e-44 180.6 115 73.0
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 8.7e-44 180.3 115 73.0
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.5e-43 179.5 115 73.9
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.9e-43 179.1 115 73.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 2.5e-43 178.7 115 73.0
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 2.5e-43 178.7 115 73.0
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.5e-43 178.7 115 74.8
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.5e-43 178.7 115 74.8
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.5e-43 178.7 115 73.9
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.5e-43 178.7 115 73.0
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 3.3e-43 178.3 115 73.9
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 4.3e-43 177.9 115 73.0
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 4.3e-43 177.9 107 78.5
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.6e-43 177.6 115 74.8
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.6e-43 177.6 115 71.3
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 7.3e-43 177.2 114 73.7
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 7.3e-43 177.2 114 73.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 7.3e-43 177.2 115 72.2
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 7.3e-43 177.2 115 73.0
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 9.6e-43 176.8 115 73.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 9.6e-43 176.8 115 73.0
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.3e-42 176.4 115 72.2
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.3e-42 176.4 115 71.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.1e-42 175.6 115 72.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.8e-42 175.3 115 71.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.8e-42 175.3 115 72.2
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 3.6e-42 174.9 115 71.3
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.8e-42 174.5 115 71.3
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 4.8e-42 174.5 115 73.0
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 8.1e-42 173.7 113 70.8
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.1e-41 173.3 113 71.7
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.1e-41 173.3 113 71.7
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.1e-41 173.3 115 71.3
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.4e-41 172.9 113 70.8
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.4e-41 172.9 113 70.8
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.8e-41 172.6 115 70.4
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 9.0e-41 170.2 113 70.8
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.0e-40 169.1 115 69.6
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.0e-40 169.1 115 69.6
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.6e-40 168.7 114 69.3
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 9.9e-40 166.8 115 67.0
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.3e-39 166.4 115 67.8
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.2e-39 165.6 115 67.8
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.2e-39 165.6 106 71.7
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.9e-39 165.2 107 71.0
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.9e-38 162.5 115 67.0
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.7e-37 158.7 115 68.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 6.0e-37 157.5 115 66.1
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 7.9e-37 157.1 109 70.6
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.8e-36 156.0 115 64.3
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 3.0e-36 155.2 115 66.1
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 6.7e-36 154.1 115 64.3
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 9.6e-35 150.2 114 61.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.3e-34 149.8 90 77.8
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 6.2e-34 147.5 115 58.3
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 6.2e-34 147.5 114 60.5
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.4e-33 146.4 103 66.0
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.0e-33 144.8 103 65.0
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 5.3e-33 144.4 85 81.2
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.0e-33 143.7 84 78.6
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.5e-32 142.9 84 78.6
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 5.8e-32 141.0 117 60.7
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.4e-30 136.3 113 58.4
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.2e-29 133.3 115 59.1
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.6e-26 122.9 115 55.7
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 8.2e-26 120.6 92 65.2
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.1e-25 120.2 77 70.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.0e-24 115.9 115 53.0
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 5.7e-19 97.8 91 56.0
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 5.5e-14 81.3 67 58.2
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.5e-08 61.6 34 79.4
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 4.5e-08 61.6 46 58.7
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-07 60.1 115 35.7
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.7e-07 59.7 35 74.3


User provided reference genes

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