Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1798.9 919 100.0
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1186.8 1253 56.8
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1098.2 1197 53.6
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 1077.4 1340 48.9
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 2.1e-305 1052.4 1343 48.0
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 1.0e-296 1023.5 1375 46.6
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 2.1e-294 1015.8 1346 46.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 2.0e-292 1009.2 1351 46.4
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 4.5e-292 1008.1 1352 46.5
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 1.9e-290 1002.7 1334 47.0
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 2.1e-289 999.2 1372 46.1
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 7.2e-282 974.2 1278 48.0
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 7.9e-281 970.7 1358 45.5
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 2.6e-276 955.7 1352 45.6
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 7.7e-276 954.1 1389 44.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 6.5e-275 951.0 1380 44.4
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 8.5e-275 950.7 1384 44.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 9.4e-274 947.2 1383 44.0
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 3.6e-273 945.3 1373 45.0
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 1.0e-272 943.7 1419 43.1
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 1.4e-272 943.3 1360 44.3
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 2.3e-272 942.6 1381 44.0
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 7.4e-271 937.6 1372 44.8
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 1.8e-269 932.9 1372 44.7
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 1.2e-268 930.2 1378 44.3
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 1.5e-268 929.9 1386 43.8
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 1.5e-268 929.9 1351 44.8
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 1.0e-267 927.2 1262 46.8
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 1.0e-267 927.2 1362 43.9
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 1.0e-267 927.2 1381 43.2
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 5.0e-267 924.9 1345 44.3
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 8.5e-267 924.1 1384 44.3
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 5.5e-266 921.4 1360 44.8
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 1.8e-264 916.4 1360 44.7
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 8.8e-264 914.1 1373 44.0
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 8.8e-264 914.1 1414 42.7
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 4.4e-263 911.8 1371 43.5
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 5.7e-263 911.4 1378 44.0
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 5.7e-263 911.4 1390 43.4
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 9.7e-263 910.6 1373 43.8
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 1.7e-262 909.8 1386 43.0
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 7.0e-261 904.4 1267 45.7
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 1.2e-260 903.7 1335 43.7
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 3.5e-260 902.1 1381 43.3
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 4.5e-260 901.7 1376 43.1
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 4.5e-260 901.7 1371 43.2
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 4.5e-260 901.7 1367 43.7
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 1.0e-259 900.6 1383 43.5
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 1.0e-259 900.6 1384 43.4
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 1.7e-259 899.8 1385 43.5
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 1.7e-259 899.8 1367 43.5
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 3.8e-259 898.7 1378 41.8
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 6.5e-259 897.9 1379 41.7
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 8.5e-259 897.5 1383 43.4
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 3.2e-258 895.6 1379 42.2
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 5.5e-258 894.8 1370 42.6
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 9.4e-258 894.0 1383 43.2
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 1.6e-257 893.3 1384 42.3
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 4.7e-257 891.7 1377 43.7
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 3.0e-256 889.0 1366 43.1
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 2.6e-255 885.9 1291 44.9
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 2.6e-255 885.9 1384 42.1
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 5.7e-255 884.8 1355 43.1
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 9.7e-255 884.0 1234 46.1
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 2.2e-254 882.9 1385 42.1
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 2.8e-254 882.5 1342 43.5
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 2.4e-253 879.4 1356 43.3
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 2.4e-253 879.4 1356 43.3
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 1.3e-251 873.6 1371 42.5
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 1.7e-251 873.2 1360 41.7
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 2.2e-251 872.8 1337 42.8
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 5.0e-251 871.7 1320 43.1
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.0e-248 862.1 1342 42.3
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 1.0e-243 847.4 1328 41.9
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.3e-243 847.0 1323 42.6
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 7.2e-242 841.3 1302 42.4
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 1.2e-241 840.5 1327 42.6
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 2.6e-239 832.8 1295 43.2
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 2.0e-236 823.2 1301 41.9
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 2.7e-236 822.8 1304 41.8
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 2.3e-235 819.7 1364 40.9
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 5.0e-235 818.5 1338 41.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 8.6e-235 817.8 1329 41.2
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 1.5e-234 817.0 1296 43.7
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 1.6e-233 813.5 1292 42.7
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 2.1e-233 813.1 1205 44.5
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 6.8e-232 808.1 1093 46.1
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 1.2e-231 807.4 1297 42.4
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 1.5e-231 807.0 1302 41.5
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 5.7e-231 805.1 1239 43.9
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 1.7e-230 803.5 1227 43.6
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 1.7e-230 803.5 1227 43.6
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 1.7e-230 803.5 509 81.1
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 8.3e-230 801.2 513 78.2
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 3.2e-229 799.3 1230 43.3
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 3.2e-229 799.3 1230 43.3
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 2.2e-222 776.5 473 83.5
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 2.1e-212 743.4 1285 41.4
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 1.0e-211 741.1 513 74.1
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.1e-209 733.4 1374 37.2
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 1.7e-206 723.8 1265 39.1
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 1.2e-204 717.6 1419 37.1
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.9e-203 712.6 1292 38.9
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 7.3e-194 681.8 511 69.1
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 6.9e-192 675.2 559 65.7
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 9.3e-189 664.8 1125 40.7
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 4.1e-168 596.3 1127 38.6
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 2.1e-164 583.9 381 77.7
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 8.5e-158 562.0 335 84.2
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 6.7e-155 552.4 566 54.8
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 2.8e-137 493.8 589 50.9
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.9e-133 481.1 394 65.5
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 6.8e-131 472.6 562 47.9
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 9.8e-130 468.8 522 51.1
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.2e-121 441.0 543 46.8
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 5.4e-120 436.4 540 47.0
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 5.2e-107 393.3 264 77.7
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 7.8e-103 379.4 268 71.6
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 7.5e-98 362.8 426 50.7
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 1.6e-95 355.1 1031 31.9
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 3.1e-75 287.7 404 46.0
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 5.3e-75 287.0 420 45.5
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 1.7e-73 282.0 407 45.7
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 2.9e-73 281.2 298 52.3
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 3.8e-73 280.8 436 43.8
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.9e-72 278.5 408 45.6
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 9.6e-69 266.2 415 42.7
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 7.1e-64 250.0 204 64.7
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 9.3e-64 249.6 204 65.2
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.1e-61 242.7 323 47.1
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 4.8e-60 237.3 243 58.4
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.7e-49 202.2 200 55.5
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 1.8e-46 192.2 127 75.6
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.0e-34 152.1 176 46.0
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.0e-33 149.8 127 57.5
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 4.2e-24 117.9 239 32.6
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.5e-21 109.4 266 34.2
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 3.4e-21 108.2 201 41.3
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 9.5e-08 63.5 187 31.0
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 2.8e-07 62.0 98 45.9
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 6.1e-07 60.8 37 78.4
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 4.0e-06 58.2 107 40.2


User provided reference genes

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