Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 0.0e+00 1956.8 1001 100.0
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 0.0e+00 1080.1 979 60.2
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 7.0e-307 1057.4 978 59.2
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.6e-306 1056.2 978 59.0
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 2.2e-300 1035.8 977 58.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 9.8e-293 1010.4 1003 55.5
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.3e-281 972.6 975 55.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 6.8e-278 961.1 978 55.5
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 6.8e-278 961.1 973 55.4
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 3.7e-276 955.3 983 55.5
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 7.1e-275 951.0 946 57.9
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.1e-274 949.5 982 54.1
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 4.6e-274 948.3 976 55.1
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.0e-273 945.7 980 57.0
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.5e-272 942.6 978 55.0
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 8.9e-270 934.1 983 54.3
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.4e-269 932.2 977 54.1
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.9e-268 929.1 989 54.9
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.9e-268 928.3 980 54.3
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.9e-267 926.4 985 53.8
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 2.4e-267 926.0 718 67.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.2e-267 925.6 982 53.7
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.6e-266 921.8 984 53.9
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.7e-265 919.8 985 53.5
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.3e-265 919.5 982 53.5
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 6.6e-265 917.9 982 53.3
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 6.6e-265 917.9 986 53.3
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 2.5e-264 916.0 978 53.0
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 5.6e-264 914.8 972 54.6
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 9.6e-264 914.1 979 54.0
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.4e-262 909.4 989 53.1
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 4.0e-262 908.7 995 52.7
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 5.3e-262 908.3 977 52.5
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 6.9e-262 907.9 987 53.4
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.2e-261 907.1 721 65.6
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 9.9e-261 904.0 983 52.6
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 4.9e-260 901.7 982 51.7
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.9e-259 899.8 990 53.7
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.2e-259 898.7 977 52.3
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.0e-258 894.8 991 53.6
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.7e-257 893.3 976 52.6
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 8.7e-257 891.0 981 51.7
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.5e-256 890.2 980 52.1
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.3e-256 889.0 1011 51.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.6e-256 888.3 991 53.3
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 7.3e-256 887.9 937 53.1
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.8e-255 885.9 982 52.7
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 2.8e-255 885.9 980 52.2
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 5.3e-254 881.7 977 51.2
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 6.9e-254 881.3 979 51.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 3.4e-253 879.0 980 51.9
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.2e-252 876.3 978 52.6
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 3.8e-252 875.5 720 64.9
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 2.4e-251 872.8 958 53.2
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.2e-250 870.5 854 56.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.6e-250 870.2 977 51.7
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 6.0e-250 868.2 957 53.3
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 5.1e-249 865.1 1020 49.8
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 5.1e-249 865.1 961 51.4
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.5e-248 862.8 1018 50.7
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 8.1e-247 857.8 977 50.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 3.1e-246 855.9 935 51.7
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 3.1e-246 855.9 913 53.6
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 9.0e-246 854.4 978 50.3
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.5e-245 853.6 989 51.0
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.5e-245 853.6 989 51.0
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.3e-244 850.5 973 52.7
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 8.4e-244 847.8 978 50.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 4.2e-243 845.5 1012 49.5
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 2.7e-242 842.8 976 51.2
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 3.0e-241 839.3 968 51.2
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 5.1e-241 838.6 981 50.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.7e-240 835.1 979 51.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.8e-239 832.8 979 51.6
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.8e-239 832.8 954 50.8
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 5.3e-238 828.6 947 49.7
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.9e-238 828.2 974 51.0
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 9.0e-238 827.8 1007 49.3
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.7e-236 823.5 972 49.4
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 4.9e-236 822.0 716 61.6
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 6.5e-236 821.6 951 50.6
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 8.4e-236 821.2 982 49.6
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.2e-235 819.3 956 50.1
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.2e-234 817.4 910 51.5
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.3e-233 813.9 954 50.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 3.9e-233 812.4 963 50.7
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 4.3e-232 808.9 1008 49.1
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 9.7e-232 807.7 871 53.2
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 9.7e-232 807.7 954 49.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 5.3e-230 802.0 988 48.4
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 2.0e-229 800.0 980 49.3
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.4e-227 793.9 952 48.8
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 6.7e-225 785.0 962 48.2
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 9.4e-219 764.6 956 47.6
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 5.1e-217 758.8 959 47.4
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 9.7e-216 754.6 975 46.8
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.8e-214 750.4 741 54.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.6e-210 737.3 1027 44.9
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-208 731.1 730 54.0
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.3e-204 717.6 840 51.8
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 9.4e-203 711.4 758 51.6
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 6.1e-202 708.8 600 63.7
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.8e-199 699.9 768 52.2
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 5.9e-189 665.6 725 51.4
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 3.6e-186 656.4 650 53.2
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 9.8e-184 648.3 644 54.2
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-182 643.7 693 53.7
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.5e-179 633.6 984 43.5
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.6e-178 630.9 713 48.9
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.1e-174 618.2 432 73.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.7e-164 584.3 420 71.7
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 9.9e-160 568.5 670 47.2
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 2.4e-158 563.9 736 47.0
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 6.0e-157 559.3 705 46.5
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.7e-151 541.2 622 47.9
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 7.3e-147 525.8 653 46.7
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 9.9e-144 515.4 650 45.7
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.2e-143 514.2 511 53.2
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 7.9e-141 505.8 534 50.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.8e-136 489.6 731 44.9
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.3e-130 471.9 728 41.8
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.8e-122 444.1 779 39.5
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 9.7e-107 392.5 648 38.1
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.1e-102 379.0 550 44.0
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.5e-94 351.3 286 64.7
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 3.3e-91 340.9 569 39.9
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 5.7e-91 340.1 250 69.2
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 5.3e-89 333.6 496 39.9
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 4.7e-85 320.5 419 47.5
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.2e-79 301.6 186 77.4
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 5.9e-72 276.9 194 70.6
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 9.5e-70 269.6 235 62.1
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.7e-66 258.8 177 72.3
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.4e-65 255.0 256 57.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 3.1e-60 238.0 272 47.4
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-49 201.4 131 74.8
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 2.7e-48 198.4 133 70.7
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.8e-48 196.8 141 69.5
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.7e-47 195.7 264 47.0
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.8e-44 185.7 317 40.1
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 6.8e-44 183.7 175 52.0
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.1e-36 159.8 114 64.0
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 8.9e-36 156.8 534 27.9
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.3e-34 152.9 196 48.5
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.7e-26 125.9 79 75.9
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.2e-18 99.0 295 33.2
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 2.9e-18 98.6 548 24.5
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.8e-13 82.0 48 83.3
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 4.0e-12 78.2 76 48.7
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.5e-09 68.9 364 25.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 6.0e-08 64.3 47 57.4


User provided reference genes

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