Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.4e-62 242.7 115 100.0
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.9e-27 125.9 88 67.0
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 4.8e-26 121.3 93 59.1
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 6.3e-26 120.9 86 62.8
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 5.3e-25 117.9 93 55.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.5e-24 116.3 86 64.0
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.4e-24 115.2 83 61.4
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 5.9e-24 114.4 87 62.1
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 5.9e-24 114.4 86 61.6
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 3.8e-23 111.7 87 63.2
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 3.8e-23 111.7 92 55.4
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 5.0e-23 111.3 87 60.9
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 8.4e-23 110.5 87 62.1
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 8.4e-23 110.5 99 55.6
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 5.5e-22 107.8 87 54.0
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 5.5e-22 107.8 86 59.3
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 7.2e-22 107.5 91 53.8
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 7.2e-22 107.5 88 50.0
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.7e-21 105.5 88 50.0
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 3.5e-21 105.1 92 52.2
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 6.1e-21 104.4 87 55.2
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.0e-20 103.6 87 58.6
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.0e-20 103.6 88 50.0
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.3e-20 103.2 90 55.6
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.8e-20 102.8 92 48.9
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.8e-20 102.8 92 50.0
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.8e-20 102.8 86 54.7
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.8e-20 102.8 93 51.6
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-20 102.4 92 48.9
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.3e-20 102.4 93 50.5
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 3.0e-20 102.1 87 56.3
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.7e-20 100.9 93 53.8
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 6.7e-20 100.9 92 54.3
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 8.7e-20 100.5 88 46.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 8.7e-20 100.5 87 57.5
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 8.7e-20 100.5 83 56.6
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 8.7e-20 100.5 86 53.5
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 8.7e-20 100.5 88 54.5
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 8.7e-20 100.5 88 54.5
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.1e-19 100.1 87 56.3
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-19 100.1 87 52.9
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.5e-19 99.8 87 56.3
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.5e-19 99.0 92 46.7
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.5e-19 99.0 92 53.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 2.5e-19 99.0 92 52.2
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 3.3e-19 98.6 92 46.7
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.3e-19 98.6 92 46.7
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 4.3e-19 98.2 86 52.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.3e-19 98.2 86 52.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.3e-19 98.2 93 49.5
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 4.3e-19 98.2 88 55.7
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 4.3e-19 98.2 87 49.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 4.3e-19 98.2 87 49.4
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.7e-19 97.8 86 52.3
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 5.7e-19 97.8 93 49.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 7.4e-19 97.4 105 47.6
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 7.4e-19 97.4 88 54.5
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 9.7e-19 97.1 93 49.5
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.3e-18 96.7 91 54.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.6e-18 96.3 91 54.9
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.6e-18 96.3 86 48.8
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.2e-18 95.9 90 51.1
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 2.2e-18 95.9 91 50.5
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 4.8e-18 94.7 90 48.9
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 6.3e-18 94.4 87 46.0
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 6.3e-18 94.4 87 55.2
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.2e-18 94.0 92 46.7
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 8.2e-18 94.0 88 52.3
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.1e-17 92.0 73 58.9
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.1e-17 91.7 90 48.9
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 4.1e-17 91.7 81 54.3
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 5.3e-17 91.3 86 53.5
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.2e-16 90.1 91 52.7
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.6e-16 89.0 88 51.1
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.6e-16 89.0 93 47.3
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 3.4e-16 88.6 90 48.9
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 4.5e-16 88.2 86 51.2
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 5.9e-16 87.8 88 46.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 5.9e-16 87.8 85 51.8
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 7.7e-16 87.4 92 45.7
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 7.7e-16 87.4 91 40.7
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.0e-15 87.0 88 47.7
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.7e-15 86.3 88 50.0
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.7e-15 86.3 88 50.0
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.2e-15 85.9 82 50.0
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 2.9e-15 85.5 91 46.2
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 6.5e-15 84.3 87 49.4
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 8.5e-15 84.0 76 52.6
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 8.5e-15 84.0 88 48.9
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 2.5e-14 82.4 88 45.5
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 3.2e-14 82.0 78 53.8
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.2e-14 82.0 77 54.5
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.2e-14 82.0 87 54.0
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 7.2e-14 80.9 71 54.9
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.2e-13 80.1 93 40.9
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 2.7e-13 79.0 93 41.9
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 2.7e-13 79.0 79 49.4
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 4.6e-13 78.2 87 43.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.6e-13 78.2 93 40.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 6.1e-13 77.8 91 41.8
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 6.1e-13 77.8 91 41.8
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 7.9e-13 77.4 93 40.9
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.4e-12 76.6 93 39.8
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.3e-12 75.9 94 43.6
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.9e-12 75.1 93 38.7
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 5.1e-12 74.7 91 39.6
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 5.1e-12 74.7 91 39.6
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 5.1e-12 74.7 91 39.6
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 6.7e-12 74.3 73 47.9
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-11 73.6 91 38.5
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-11 73.6 93 37.6
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.1e-11 73.6 93 37.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.1e-11 73.6 87 39.1
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.5e-11 72.4 93 36.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 3.3e-11 72.0 87 41.4
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.7e-11 71.2 64 51.6
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 7.4e-11 70.9 90 37.8
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.7e-10 69.7 91 39.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.2e-10 69.3 61 52.5
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.8e-10 68.2 90 38.9
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 6.3e-10 67.8 93 36.6
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 3.1e-09 65.5 90 35.6
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.6e-08 62.4 90 36.7
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.0e-07 60.5 92 33.7
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-07 60.5 63 50.8
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 5.0e-07 58.2 62 45.2
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 5.0e-07 58.2 62 45.2
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.5e-06 55.8 62 43.5
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 3.2e-06 55.5 63 41.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.2e-06 55.5 75 40.0
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 5.5e-06 54.7 90 34.4
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 7.2e-06 54.3 63 39.7
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 7.2e-06 54.3 63 39.7


User provided reference genes

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