Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026282.1 Olea europaea HOM05D000339 ORTHO05D000212 2.2e-54 215.3 104 100.0
Migut.D01555 Erythranthe guttata HOM05D000339 ORTHO05D000212 8.2e-25 117.1 112 56.2
Nitab4.5_0001456g0200 Nicotiana tabacum HOM05D000339 ORTHO05D000212 2.6e-23 112.1 107 54.2
Nitab4.5_0016590g0010 Nicotiana tabacum HOM05D000339 ORTHO05D000212 3.4e-23 111.7 107 54.2
Lalb_Chr05g0221701 Lupinus albus HOM05D000339 ORTHO05D000212 2.2e-22 109.0 113 50.4
CAN.G1129.56 Capsicum annuum HOM05D000339 ORTHO05D000212 3.8e-22 108.2 106 54.7
Thecc.03G054500 Theobroma cacao HOM05D000339 ORTHO05D000212 3.8e-22 108.2 103 54.4
Manes.06G007300 Manihot esculenta HOM05D000339 ORTHO05D000212 8.4e-22 107.1 108 54.6
Cfa019667 Carpinus fangiana HOM05D000339 ORTHO05D000212 1.1e-21 106.7 107 49.5
Duzib205G0598 Durio zibethinus HOM05D000339 ORTHO05D000212 1.4e-21 106.3 104 52.9
Oeu015085.1 Olea europaea HOM05D000339 ORTHO05D000212 1.4e-21 106.3 107 54.2
Sabra15G0070900 Salix brachista HOM05D000339 ORTHO05D000212 1.4e-21 106.3 114 51.8
Duzib084G0984 Durio zibethinus HOM05D000339 ORTHO05D000212 1.9e-21 105.9 108 50.0
Potri.015G039100 Populus trichocarpa HOM05D000339 ORTHO05D000212 1.9e-21 105.9 114 50.9
Lalb_Chr16g0387021 Lupinus albus HOM05D000339 ORTHO05D000212 2.5e-21 105.5 114 49.1
Glyma.05G245900 Glycine max HOM05D000339 ORTHO05D000212 3.2e-21 105.1 112 49.1
Cpa.g.sc3.402 Carica papaya HOM05D000339 ORTHO05D000212 5.5e-21 104.4 111 49.5
DCAR_023274 Daucus carota HOM05D000339 ORTHO05D000212 7.2e-21 104.0 115 50.4
MSTRG.9298 Avicennia marina HOM05D000339 ORTHO05D000212 1.2e-20 103.2 108 51.9
COL.COLO4_37684 Corchorus olitorius HOM05D000339 ORTHO05D000212 1.6e-20 102.8 104 54.8
Manes.14G170900 Manihot esculenta HOM05D000339 ORTHO05D000212 2.1e-20 102.4 110 50.0
Glyma.08G053702 Glycine max HOM05D000339 ORTHO05D000212 3.5e-20 101.7 112 48.2
Phvul.002G329500 Phaseolus vulgaris HOM05D000339 ORTHO05D000212 3.5e-20 101.7 112 46.4
Solyc03g118770.4 Solanum lycopersicum HOM05D000339 ORTHO05D000212 4.6e-20 101.3 103 51.5
Cc04_g06330 Coffea canephora HOM05D000339 ORTHO05D000212 7.9e-20 100.5 103 53.4
Haze_18839 Corylus avellana HOM05D000339 ORTHO05D000212 7.9e-20 100.5 106 49.1
Prupe.5G232600 Prunus persica HOM05D000339 ORTHO05D000212 7.9e-20 100.5 119 51.3
Peaxi162Scf00683g00044 Petunia axillaris HOM05D000339 ORTHO05D000212 1.0e-19 100.1 105 51.4
VMungo0464G1747 Vigna mungo HOM05D000339 ORTHO05D000212 1.0e-19 100.1 111 49.5
Lj4g0005482 Lotus japonicus HOM05D000339 ORTHO05D000212 1.8e-19 99.4 117 48.7
MD14G1235800 Malus domestica HOM05D000339 ORTHO05D000212 1.8e-19 99.4 120 52.5
ClCG04G010670 Citrullus lanatus HOM05D000339 ORTHO05D000212 2.3e-19 99.0 109 50.5
CiPaw.16G093000 Carya illinoinensis HOM05D000339 ORTHO05D000212 3.0e-19 98.6 107 50.5
PGSC0003DMG400005670 Solanum tuberosum HOM05D000339 ORTHO05D000212 3.0e-19 98.6 106 51.9
MSTRG.4575 Avicennia marina HOM05D000339 ORTHO05D000212 3.9e-19 98.2 107 51.4
VMungo0251G0580 Vigna mungo HOM05D000339 ORTHO05D000212 5.1e-19 97.8 110 47.3
Psat7g002400 Pisum sativum HOM05D000339 ORTHO05D000212 3.3e-18 95.1 120 43.3
Sabra15G0038100 Salix brachista HOM05D000339 ORTHO05D000212 3.3e-18 95.1 133 44.4
Actinidia28130 Actinidia chinensis HOM05D000339 ORTHO05D000212 4.3e-18 94.7 117 50.4
RcHm_v2.0_Chr7g0178511 Rosa chinensis HOM05D000339 ORTHO05D000212 4.3e-18 94.7 121 46.3
MELO3C002129.2 Cucumis melo HOM05D000339 ORTHO05D000212 5.7e-18 94.4 111 45.9
CsaV3_1G007120 Cucumis sativus L. HOM05D000339 ORTHO05D000212 5.7e-18 94.4 111 45.9
MD06G1231300 Malus domestica HOM05D000339 ORTHO05D000212 9.7e-18 93.6 116 49.1
CiPaw.15G142700 Carya illinoinensis HOM05D000339 ORTHO05D000212 1.3e-17 93.2 108 47.2
FAN13G1871 Fragaria x ananassa HOM05D000339 ORTHO05D000212 1.3e-17 93.2 113 46.0
Sopen03g037710 Solanum pennellii HOM05D000339 ORTHO05D000212 1.3e-17 93.2 106 49.1
Eucgr.B00945 Eucalyptus grandis HOM05D000339 ORTHO05D000212 1.6e-17 92.8 97 52.6
GSVIVG01008424001 Vitis vinifera HOM05D000339 ORTHO05D000212 1.6e-17 92.8 108 50.0
Sabra12G0033500 Salix brachista HOM05D000339 ORTHO05D000212 2.2e-17 92.4 109 50.5
FAN04G2675 Fragaria x ananassa HOM05D000339 ORTHO05D000212 3.7e-17 91.7 116 46.6
Medtr8g107210 Medicago truncatula HOM05D000339 ORTHO05D000212 3.7e-17 91.7 125 41.6
Sed0005608 Sechium edule HOM05D000339 ORTHO05D000212 3.7e-17 91.7 115 46.1
QL10p028490 Quercus lobata HOM05D000339 ORTHO05D000212 6.3e-17 90.9 113 48.7
Sabra15G0057700 Salix brachista HOM05D000339 ORTHO05D000212 6.3e-17 90.9 133 44.4
TWI60G1718 Tripterygium wilfordii HOM05D000339 ORTHO05D000212 6.3e-17 90.9 104 47.1
GSVIVG01011738001 Vitis vinifera HOM05D000339 ORTHO05D000212 6.3e-17 90.9 116 42.2
Ciclev10008783m.g Citrus clementina HOM05D000339 ORTHO05D000212 8.2e-17 90.5 105 47.6
FAN08G2756 Fragaria x ananassa HOM05D000339 ORTHO05D000212 8.2e-17 90.5 118 45.8
FAN18G3640 Fragaria x ananassa HOM05D000339 ORTHO05D000212 8.2e-17 90.5 117 46.2
Lsat_1_v5_gn_5_72381 Lactuca sativa HOM05D000339 ORTHO05D000212 8.2e-17 90.5 107 52.3
Phvul.004G151575 Phaseolus vulgaris HOM05D000339 ORTHO05D000212 8.2e-17 90.5 111 46.8
FvH4_5g17270 Fragaria vesca HOM05D000339 ORTHO05D000212 1.1e-16 90.1 118 45.8
Nn3g18264 Nelumbo nucifera HOM05D000339 ORTHO05D000212 1.1e-16 90.1 107 49.5
Nn4g24211 Nelumbo nucifera HOM05D000339 ORTHO05D000212 1.1e-16 90.1 106 49.1
TWI81G0853 Tripterygium wilfordii HOM05D000339 ORTHO05D000212 1.8e-16 89.4 107 45.8
TPR.G1426 Trifolium pratense HOM05D000339 ORTHO05D000212 3.1e-16 88.6 128 39.8
Atru.chr9.1742 Acer truncatum HOM05D000339 ORTHO05D000212 6.9e-16 87.4 123 42.3
TAR622G0891 Trochodendron aralioides HOM05D000339 ORTHO05D000212 6.9e-16 87.4 97 49.5
Dinv14418 Davidia involucrata HOM05D000339 ORTHO05D000212 9.0e-16 87.0 120 42.5
PGR083G0002 Punica granatum HOM05D000339 ORTHO05D000212 1.2e-15 86.7 105 49.5
Sed0002793 Sechium edule HOM05D000339 ORTHO05D000212 1.2e-15 86.7 107 47.7
Gohir.A12G269100 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.5e-15 86.3 104 48.1
Gohir.D12G269500 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.5e-15 86.3 104 48.1
Gorai.008G289800 Gossypium raimondii HOM05D000339 ORTHO05D000212 1.5e-15 86.3 104 48.1
Potri.012G047700 Populus trichocarpa HOM05D000339 ORTHO05D000212 3.4e-15 85.1 116 44.0
PSO017G5838 Papaver somniferum HOM05D000339 ORTHO05D000212 7.7e-15 84.0 96 46.9
CDE05G3341 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 1.0e-14 83.6 101 46.5
PSO478G1004 Papaver somniferum HOM05D000339 ORTHO05D000212 1.0e-14 83.6 96 46.9
Lalb_Chr22g0353401 Lupinus albus HOM05D000339 ORTHO05D000212 1.3e-14 83.2 112 42.9
MBI12_g41015_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 1.7e-14 82.8 112 44.6
CDE05G0515 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 2.9e-14 82.0 101 46.5
Actinidia06842 Actinidia chinensis HOM05D000339 ORTHO05D000212 6.5e-14 80.9 116 47.4
Ca_17194_v3 Cicer arietinum L. HOM05D000339 ORTHO05D000212 8.5e-14 80.5 101 43.6
Aqoxy3G00084 Aquilegia oxysepala HOM05D000339 ORTHO05D000212 1.1e-13 80.1 124 42.7
CDE06G2692 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 1.1e-13 80.1 98 45.9
Glyma.07G101000 Glycine max HOM05D000339 ORTHO05D000212 1.1e-13 80.1 111 44.1
SalBow8G2444 Salvia bowleyana HOM05D000339 ORTHO05D000212 1.4e-13 79.7 101 42.6
QL01p001303 Quercus lobata HOM05D000339 ORTHO05D000212 1.9e-13 79.3 100 44.0
SalBow8G2225 Salvia bowleyana HOM05D000339 ORTHO05D000212 1.9e-13 79.3 101 42.6
CDE07G1275 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 2.5e-13 79.0 98 44.9
MBI12_g38294_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 4.2e-13 78.2 95 47.4
Glyma.09G177800 Glycine max HOM05D000339 ORTHO05D000212 5.5e-13 77.8 106 45.3
unitig_747.g21332 Utricularia gibba HOM05D000339 ORTHO05D000212 7.2e-13 77.4 127 41.7
ATR0564G332 Amborella trichopoda HOM05D000339 ORTHO05D000212 9.4e-13 77.0 95 44.2
ECA233G5080 Erigeron canadensis HOM05D000339 ORTHO05D000212 1.2e-12 76.6 115 45.2
Migut.L00355 Erythranthe guttata HOM05D000339 ORTHO05D000212 1.6e-12 76.3 92 45.7
Lalb_Chr14g0370731 Lupinus albus HOM05D000339 ORTHO05D000212 1.6e-12 76.3 111 44.1
Dinv27618 Davidia involucrata HOM05D000339 ORTHO05D000212 3.6e-12 75.1 134 37.3
BcaB04g18976 Brassica carinata HOM05D000339 ORTHO05D000212 1.0e-11 73.6 110 40.9
BcaB06g25866 Brassica carinata HOM05D000339 ORTHO05D000212 1.0e-11 73.6 118 40.7
BolC5t33563H Brassica oleracea HOM05D000339 ORTHO05D000212 1.4e-11 73.2 112 40.2
A03p40490 Brassica napus HOM05D000339 ORTHO05D000212 1.8e-11 72.8 114 39.5
BraA03t13208Z Brassica rapa HOM05D000339 ORTHO05D000212 1.8e-11 72.8 114 39.5
BcaC01g03716 Brassica carinata HOM05D000339 ORTHO05D000212 2.3e-11 72.4 114 41.2
C05p48300 Brassica napus HOM05D000339 ORTHO05D000212 2.3e-11 72.4 114 39.5
BolC3t17224H Brassica oleracea HOM05D000339 ORTHO05D000212 2.3e-11 72.4 114 41.2
A05p31820 Brassica napus HOM05D000339 ORTHO05D000212 3.0e-11 72.0 114 39.5
BraA05t22013Z Brassica rapa HOM05D000339 ORTHO05D000212 3.0e-11 72.0 114 39.5
Sp3g16120 Schrenkiella parvula HOM05D000339 ORTHO05D000212 3.9e-11 71.6 114 40.4
THA.LOC104821830 Tarenaya hassleriana HOM05D000339 ORTHO05D000212 3.9e-11 71.6 104 44.2
Thecc.02G283500 Theobroma cacao HOM05D000339 ORTHO05D000212 5.1e-11 71.2 96 44.8
CSS0041104 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 1.5e-10 69.7 112 41.1
C03p49330 Brassica napus HOM05D000339 ORTHO05D000212 2.0e-10 69.3 114 38.6
Thhalv10022042m.g Eutrema salsugineum HOM05D000339 ORTHO05D000212 3.3e-10 68.6 115 39.1
arahy.Tifrunner.gnm1.ann1.GA9U6U Arachis hypogaea HOM05D000339 ORTHO05D000212 5.7e-10 67.8 112 39.3
CSS0038779 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 5.7e-10 67.8 112 40.2
Dinv07663 Davidia involucrata HOM05D000339 ORTHO05D000212 7.4e-10 67.4 80 43.8
Rhsim09G0096200 Rhododendron simsii HOM05D000339 ORTHO05D000212 7.4e-10 67.4 106 39.6
AT3G18010 Arabidopsis thaliana HOM05D000339 ORTHO05D000212 9.7e-10 67.0 115 37.4
Aa31LG8G4860 Aethionema arabicum HOM05D000339 ORTHO05D000212 1.7e-09 66.2 107 37.4
AL143U10010 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 1.7e-09 66.2 116 38.8
AL3G31160 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 1.7e-09 66.2 116 38.8
EL10Ac9g22861 Beta vulgaris HOM05D000339 ORTHO05D000212 1.7e-09 66.2 120 38.3
Carub.0003s1772 Capsella rubella HOM05D000339 ORTHO05D000212 2.2e-09 65.9 118 37.3
Ciclev10017657m.g Citrus clementina HOM05D000339 ORTHO05D000212 2.2e-09 65.9 117 41.0
MSTRG.13597 Avicennia marina HOM05D000339 ORTHO05D000212 3.7e-09 65.1 93 40.9
CARHR093320 Cardamine hirsuta HOM05D000339 ORTHO05D000212 4.8e-09 64.7 115 38.3
ClCG06G014350 Citrullus lanatus HOM05D000339 ORTHO05D000212 4.8e-09 64.7 106 39.6
Medtr3g088485 Medicago truncatula HOM05D000339 ORTHO05D000212 6.3e-09 64.3 109 34.9
Manes.17G078400 Manihot esculenta HOM05D000339 ORTHO05D000212 8.2e-09 63.9 120 37.5
Ah.01g013350 Amaranthus hybridus HOM05D000339 ORTHO05D000212 1.8e-08 62.8 84 47.6
MSTRG.2161 Avicennia marina HOM05D000339 ORTHO05D000212 1.8e-08 62.8 92 40.2
SGA_v2.0_scaffold234G43613 Striga asiatica HOM05D000339 ORTHO05D000212 1.8e-08 62.8 113 35.4
A05p29400 Brassica napus HOM05D000339 ORTHO05D000212 3.1e-08 62.0 98 44.9
SalBow2G3481 Salvia bowleyana HOM05D000339 ORTHO05D000212 3.1e-08 62.0 81 42.0
Sc12g0007200 Simmondsia chinensis HOM05D000339 ORTHO05D000212 4.1e-08 61.6 108 36.1
TAR629G1086 Trochodendron aralioides HOM05D000339 ORTHO05D000212 4.1e-08 61.6 45 66.7
unitig_699.g19659 Utricularia gibba HOM05D000339 ORTHO05D000212 4.1e-08 61.6 49 55.1
unitig_0.g2229 Utricularia gibba HOM05D000339 ORTHO05D000212 5.3e-08 61.2 107 39.3
A05p29630 Brassica napus HOM05D000339 ORTHO05D000212 6.9e-08 60.8 98 43.9
Sed0003514 Sechium edule HOM05D000339 ORTHO05D000212 6.9e-08 60.8 109 36.7
SalBow1G4625 Salvia bowleyana HOM05D000339 ORTHO05D000212 1.2e-07 60.1 44 68.2
DCAR_023593 Daucus carota HOM05D000339 ORTHO05D000212 1.5e-07 59.7 85 41.2
Gorai.002G178400 Gossypium raimondii HOM05D000339 ORTHO05D000212 2.0e-07 59.3 92 42.4
Medtr8g095580 Medicago truncatula HOM05D000339 ORTHO05D000212 2.0e-07 59.3 115 35.7
CSS0023556 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 3.4e-07 58.5 47 59.6
BcaB07g30741 Brassica carinata HOM05D000339 ORTHO05D000212 4.5e-07 58.2 70 47.1
BcaB07g30742 Brassica carinata HOM05D000339 ORTHO05D000212 4.5e-07 58.2 70 47.1
Cc11_g08460 Coffea canephora HOM05D000339 ORTHO05D000212 4.5e-07 58.2 52 51.9
C09p30160 Brassica napus HOM05D000339 ORTHO05D000212 5.9e-07 57.8 70 42.9
TAR374G1529 Trochodendron aralioides HOM05D000339 ORTHO05D000212 5.9e-07 57.8 45 66.7
CsaV3_1G004310 Cucumis sativus L. HOM05D000339 ORTHO05D000212 7.7e-07 57.4 123 32.5
Atru.chr11.474 Acer truncatum HOM05D000339 ORTHO05D000212 1.0e-06 57.0 73 45.2
BcaC05g28726 Brassica carinata HOM05D000339 ORTHO05D000212 1.0e-06 57.0 52 55.8
CiPaw.06G046900 Carya illinoinensis HOM05D000339 ORTHO05D000212 1.0e-06 57.0 98 37.8
Gohir.A01G151300 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.0e-06 57.0 92 41.3
CSS0009726 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 1.3e-06 56.6 44 61.4
Cpa.g.sc65.159 Carica papaya HOM05D000339 ORTHO05D000212 1.3e-06 56.6 60 51.7
Thhalv10009654m.g Eutrema salsugineum HOM05D000339 ORTHO05D000212 1.3e-06 56.6 64 42.2
Gohir.D01G144500 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.3e-06 56.6 92 41.3
arahy.Tifrunner.gnm1.ann1.2E2A40 Arachis hypogaea HOM05D000339 ORTHO05D000212 2.2e-06 55.8 29 82.8
AUR62017610 Chenopodium quinoa HOM05D000339 ORTHO05D000212 2.2e-06 55.8 29 82.8
Haze_10981 Corylus avellana HOM05D000339 ORTHO05D000212 2.2e-06 55.8 75 44.0
Duzib068G1069 Durio zibethinus HOM05D000339 ORTHO05D000212 2.2e-06 55.8 45 60.0
HanXRQChr12g0381151 Helianthus annuus HOM05D000339 ORTHO05D000212 2.2e-06 55.8 29 82.8
Oeu046167.1 Olea europaea HOM05D000339 ORTHO05D000212 2.2e-06 55.8 29 82.8
BcaC04g21580 Brassica carinata HOM05D000339 ORTHO05D000212 2.9e-06 55.5 50 54.0
A09p23420 Brassica napus HOM05D000339 ORTHO05D000212 2.9e-06 55.5 32 71.9
BraA09t37942Z Brassica rapa HOM05D000339 ORTHO05D000212 2.9e-06 55.5 32 71.9
Manes.15G129200 Manihot esculenta HOM05D000339 ORTHO05D000212 5.0e-06 54.7 41 61.0
Duzib268G0135 Durio zibethinus HOM05D000339 ORTHO05D000212 6.5e-06 54.3 83 41.0
Glyma.20G017600 Glycine max HOM05D000339 ORTHO05D000212 6.5e-06 54.3 80 38.8
SGA_v2.0_scaffold5199G54609 Striga asiatica HOM05D000339 ORTHO05D000212 6.5e-06 54.3 103 34.0
Duzib251G0913 Durio zibethinus HOM05D000339 ORTHO05D000212 8.5e-06 53.9 97 36.1
Potri.010G111400 Populus trichocarpa HOM05D000339 ORTHO05D000212 8.5e-06 53.9 109 36.7


User provided reference genes

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