Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 4.0e-200 701.4 411 100.0
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 8.7e-179 630.6 408 88.2
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 5.7e-162 574.7 409 78.7
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.0e-155 553.9 409 76.0
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.8e-153 545.8 409 81.4
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 8.2e-153 544.3 409 76.3
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.3e-146 521.9 409 72.9
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 8.2e-145 517.7 409 72.4
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.9e-142 509.2 409 71.6
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.9e-141 506.5 409 71.4
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.5e-141 505.0 410 73.2
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.8e-139 497.7 410 73.9
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.5e-138 496.9 409 73.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.6e-138 496.1 410 73.7
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.3e-138 495.7 410 72.2
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.2e-137 493.0 410 72.0
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.2e-137 493.0 410 70.7
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.0e-134 484.2 408 69.9
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.3e-134 483.8 412 70.9
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.1e-133 480.7 409 69.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 6.1e-132 474.9 410 68.5
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 6.1e-132 474.9 410 70.2
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 3.0e-131 472.6 410 70.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 2.0e-130 469.9 410 69.5
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 2.0e-130 469.9 413 68.8
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 4.4e-130 468.8 418 67.9
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.7e-129 466.8 416 68.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.7e-129 465.7 408 66.7
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 6.3e-129 464.9 413 67.8
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.4e-128 463.8 418 67.7
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.8e-128 463.4 409 73.1
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.0e-127 459.9 411 70.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 5.9e-127 458.4 410 69.5
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.3e-126 457.2 411 70.6
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.5e-125 453.8 412 66.5
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.5e-125 453.0 419 66.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 4.2e-125 452.2 418 65.8
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 4.2e-125 452.2 406 66.0
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 7.2e-125 451.4 422 65.2
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 9.4e-125 451.1 410 67.1
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.2e-124 450.7 410 66.3
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 6.1e-124 448.4 411 66.7
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 8.0e-124 448.0 402 66.2
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.0e-123 447.6 410 66.1
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.5e-122 443.7 407 66.3
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 9.8e-122 441.0 407 69.0
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.3e-121 440.7 412 64.8
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.2e-121 439.9 407 66.3
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.8e-121 439.5 408 64.7
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 4.8e-121 438.7 407 68.8
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 6.3e-121 438.3 407 68.8
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 1.1e-120 437.6 407 68.3
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-120 437.6 406 65.3
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-120 436.0 406 65.0
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 4.1e-120 435.6 408 63.7
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 9.1e-120 434.5 412 63.8
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 9.1e-120 434.5 406 65.0
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 1.2e-119 434.1 419 63.7
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.6e-119 433.7 417 63.1
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.0e-119 433.3 408 64.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.7e-118 430.3 412 62.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.2e-118 429.9 411 64.0
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 5.0e-118 428.7 422 62.8
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 5.0e-118 428.7 408 63.7
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.5e-118 428.3 430 63.0
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 7.2e-117 424.9 405 67.4
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 9.4e-117 424.5 406 64.5
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.6e-116 423.7 407 63.1
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.1e-116 423.3 407 64.1
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.7e-116 422.9 412 62.9
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.7e-116 422.2 409 64.5
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 8.8e-115 417.9 353 68.6
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 8.8e-115 417.9 426 62.9
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 2.6e-114 416.4 431 61.7
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 4.4e-114 415.6 403 65.8
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 4.4e-114 415.6 405 65.7
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 5.7e-114 415.2 406 64.3
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.8e-113 412.9 353 68.3
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.8e-113 412.9 333 72.1
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.9e-113 412.1 418 60.8
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 6.3e-113 411.8 414 63.3
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 8.3e-113 411.4 402 63.7
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.4e-112 410.6 417 60.9
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.4e-112 410.6 353 68.0
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.7e-111 406.4 417 60.4
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 3.5e-111 406.0 433 61.2
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.7e-111 404.8 417 60.4
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 5.0e-110 402.1 405 64.9
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.5e-109 399.8 405 64.0
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.3e-109 399.4 405 60.7
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 4.2e-109 399.1 439 59.2
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 7.2e-109 398.3 324 75.9
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.6e-108 397.1 340 70.0
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.6e-108 397.1 405 63.7
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.1e-108 396.7 433 60.3
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 2.3e-107 393.3 331 67.4
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 3.0e-107 392.9 406 60.6
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.5e-106 390.6 428 59.8
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 5.7e-106 388.7 417 60.2
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 7.5e-106 388.3 419 61.3
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 8.3e-105 384.8 419 60.4
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.8e-104 383.6 425 59.3
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-104 383.6 434 58.5
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.8e-104 383.6 434 58.5
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 9.2e-104 381.3 420 60.0
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 4.6e-103 379.0 435 58.4
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 2.3e-102 376.7 406 58.1
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.9e-102 376.3 424 59.2
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 5.6e-101 372.1 338 63.9
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.8e-99 367.1 438 58.0
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.8e-99 367.1 406 58.4
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-99 366.7 406 58.4
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.0e-98 363.6 335 60.3
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 3.4e-98 362.8 344 66.9
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.1e-96 357.8 320 68.1
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.1e-96 357.8 418 56.5
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 6.0e-95 352.1 406 54.4
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.0e-94 351.3 337 64.4
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.6e-92 344.0 440 53.2
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.9e-89 333.2 406 54.2
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.4e-88 330.1 347 61.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 4.7e-84 315.8 362 53.9
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.1e-83 314.7 342 61.4
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 6.6e-78 295.4 345 54.5
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.4e-75 287.7 426 47.7
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 6.4e-73 278.9 341 51.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 8.4e-73 278.5 240 67.5
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.4e-72 276.9 369 57.2
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-70 271.2 403 50.1
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.1e-70 269.2 367 54.5
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.1e-67 260.0 228 66.7
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.6e-58 230.3 314 51.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.6e-55 219.5 410 42.0
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 8.7e-54 215.3 208 62.0
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.7e-49 201.1 281 50.9
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.2e-48 196.8 192 63.0
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 3.9e-46 189.9 266 52.6
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 3.9e-46 189.9 266 52.6
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.3e-45 186.4 333 45.0
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 2.1e-44 184.1 246 47.6
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.2e-44 182.2 168 57.1
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.9e-41 173.7 286 38.8
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 5.7e-37 159.5 225 48.0
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.8e-36 157.1 336 41.1
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 5.3e-35 152.9 385 36.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 9.0e-35 152.1 102 76.5
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.0e-34 151.0 276 37.3
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.9e-30 136.7 212 45.8
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 4.8e-28 129.8 109 65.1
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.0e-22 112.1 248 31.9
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.4e-22 111.7 152 57.9
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 9.7e-21 105.5 121 62.0
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 8.0e-15 85.9 70 70.0
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.5e-10 70.5 222 27.0
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 1.0e-06 58.9 122 36.9
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.8e-06 55.8 46 67.4


User provided reference genes

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