Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.0e-139 500.4 316 100.0
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.0e-94 350.9 332 74.4
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 5.2e-91 338.6 330 60.0
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 6.8e-91 338.2 316 59.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.5e-90 337.0 238 72.3
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.0e-90 336.7 292 62.7
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 4.4e-90 335.5 328 58.8
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.7e-89 333.6 238 72.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.7e-89 333.6 319 63.0
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.9e-89 332.8 330 68.2
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.4e-88 330.5 285 64.9
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 7.1e-88 328.2 238 69.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 9.3e-88 327.8 291 65.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.6e-87 327.0 316 60.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.5e-87 325.9 210 75.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.6e-87 325.5 237 66.2
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 7.8e-87 324.7 270 63.7
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.0e-86 322.8 314 61.1
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.9e-86 322.4 237 67.1
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 5.1e-86 322.0 316 59.8
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 6.6e-86 321.6 281 64.8
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 6.6e-86 321.6 291 62.2
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.1e-85 320.9 288 71.9
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.1e-85 320.9 291 61.2
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.5e-85 320.5 314 62.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.9e-85 320.1 237 66.7
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.9e-85 320.1 314 56.4
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.3e-85 318.9 296 61.8
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 5.6e-85 318.5 291 61.9
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 7.3e-85 318.2 305 57.7
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.3e-84 317.4 291 60.5
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.3e-84 317.4 292 59.6
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.8e-84 316.2 291 60.1
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.8e-84 315.5 291 56.4
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.8e-84 315.5 316 63.9
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 6.2e-84 315.1 290 59.3
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 6.2e-84 315.1 230 68.3
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 8.1e-84 314.7 291 59.1
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.8e-83 313.5 307 57.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.4e-83 313.2 291 57.4
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 3.1e-83 312.8 289 69.9
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 4.0e-83 312.4 284 72.9
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 5.3e-83 312.0 312 59.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 6.9e-83 311.6 270 70.7
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 9.0e-83 311.2 294 57.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.2e-82 310.8 314 59.2
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.0e-82 310.1 287 62.7
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.4e-82 309.3 236 66.9
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 4.4e-82 308.9 289 70.6
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 9.9e-82 307.8 236 66.5
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 2.2e-81 306.6 314 68.5
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.9e-81 306.2 213 68.5
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 6.4e-81 305.1 313 60.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 8.4e-81 304.7 288 59.4
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 8.4e-81 304.7 315 56.8
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 8.4e-81 304.7 245 63.3
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 8.4e-81 304.7 266 77.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.1e-80 304.3 288 64.2
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.4e-80 303.9 239 64.9
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.9e-80 303.5 313 69.6
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.9e-80 303.5 313 69.6
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.2e-80 302.8 316 56.0
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 7.1e-80 301.6 289 59.2
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.6e-79 300.4 236 64.0
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.6e-79 300.4 191 74.3
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.1e-79 300.1 276 58.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.1e-79 300.1 268 68.3
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 2.1e-79 300.1 289 56.4
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.1e-79 300.1 292 61.0
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.7e-79 299.7 270 62.6
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.0e-78 297.7 200 72.0
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.0e-78 297.7 287 56.4
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.3e-78 297.4 305 70.2
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.3e-78 297.4 269 69.1
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.3e-78 296.6 190 73.7
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.3e-77 292.7 263 59.3
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 5.6e-77 292.0 314 60.5
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.6e-76 290.4 280 67.9
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.6e-76 290.4 316 53.2
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.8e-76 288.9 235 62.1
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 4.8e-76 288.9 292 70.5
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.4e-75 287.3 235 61.7
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.8e-75 287.0 314 58.6
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 9.0e-75 284.6 377 47.7
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.5e-74 283.9 314 66.6
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.0e-74 283.5 292 56.8
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.0e-74 283.5 289 63.3
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.6e-74 283.1 314 66.9
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.7e-73 280.4 314 60.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.7e-73 280.4 213 65.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.9e-73 279.6 220 63.2
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 3.8e-73 279.3 287 70.7
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 4.9e-73 278.9 336 55.1
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 8.4e-73 278.1 235 61.7
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.4e-72 277.3 316 53.8
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.4e-72 276.6 203 67.5
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 7.1e-72 275.0 289 64.4
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 9.3e-72 274.6 289 64.4
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.6e-71 273.9 289 64.0
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.7e-71 273.1 315 60.0
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.7e-71 273.1 315 60.0
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.9e-69 266.9 314 56.4
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 3.1e-67 259.6 245 58.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.9e-65 253.1 238 58.8
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 9.3e-64 248.1 212 60.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 6.7e-62 241.9 235 59.1
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 3.7e-60 236.1 154 70.8
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 5.3e-59 232.3 208 54.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.5e-58 230.7 288 59.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.5e-58 230.7 139 79.1
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.2e-57 226.9 233 53.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.5e-55 219.5 266 46.6
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.5e-55 219.5 271 47.6
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 5.3e-51 205.7 192 51.0
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.4e-48 197.6 186 52.2
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.9e-46 189.5 191 49.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.2e-44 181.8 151 62.9
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.9e-41 173.3 135 60.0
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 5.3e-35 152.5 97 74.2
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 5.3e-35 152.5 99 72.7
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 9.1e-35 151.8 177 44.6
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.5e-32 142.5 193 37.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 5.5e-32 142.5 265 41.1
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 9.1e-27 125.2 235 34.9
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.5e-24 117.9 72 76.4
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-23 113.6 212 30.2
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 4.0e-22 109.8 151 44.4
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 6.3e-20 102.4 214 30.4
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 8.3e-20 102.1 296 29.1
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.5e-16 90.5 148 54.7
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.4e-13 79.7 211 27.5
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.8e-12 77.0 202 28.2
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 7.0e-11 72.4 199 28.1
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.5e-10 70.1 81 50.6
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 8.6e-09 65.5 97 28.9
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 8.6e-09 65.5 80 50.0
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.0e-06 58.5 118 33.9


User provided reference genes

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