Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 0.0e+00 1212.6 659 100.0
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 5.6e-119 432.6 671 47.2
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 1.7e-112 411.0 430 54.0
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.1e-111 408.3 419 54.2
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.1e-109 401.7 419 55.1
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.2e-108 398.3 440 54.5
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.3e-107 394.8 438 52.5
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.4e-106 391.3 461 51.8
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 1.4e-106 391.3 482 49.4
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.4e-106 391.3 685 42.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.1e-106 389.8 683 41.9
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.7e-105 387.1 479 49.7
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 3.9e-104 383.3 464 51.7
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 3.9e-104 383.3 464 51.7
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 5.6e-103 379.4 469 51.0
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 2.8e-102 377.1 473 48.0
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 8.1e-102 375.6 680 41.2
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 8.9e-101 372.1 683 43.2
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 2.0e-100 370.9 430 51.9
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.6e-100 370.5 604 45.2
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 4.4e-100 369.8 685 43.1
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 6.4e-99 365.9 452 49.6
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 6.4e-99 365.9 377 55.7
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.1e-98 365.2 441 49.7
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 3.2e-98 363.6 630 45.6
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 4.1e-98 363.2 441 49.4
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 5.4e-98 362.8 476 46.0
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 7.8e-97 359.0 447 49.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.3e-96 358.2 398 52.5
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 3.0e-96 357.1 426 51.4
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.6e-96 355.9 474 46.4
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 2.5e-95 354.0 462 47.8
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.3e-95 353.2 690 42.5
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 4.3e-95 353.2 711 43.0
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 9.6e-95 352.1 501 47.1
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.2e-94 351.7 410 47.8
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.4e-93 348.2 458 48.3
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 3.1e-93 347.1 442 49.3
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.5e-92 344.7 405 48.4
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 5.8e-92 342.8 428 49.8
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 3.8e-91 340.1 645 42.0
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.4e-90 338.2 452 45.4
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 4.2e-90 336.7 482 46.3
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.2e-89 335.1 361 53.2
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.6e-89 334.7 443 46.7
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 3.5e-89 333.6 484 45.2
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 6.0e-89 332.8 445 48.1
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.9e-88 330.1 444 46.4
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 6.6e-88 329.3 408 48.3
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 4.3e-87 326.6 420 47.6
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.3e-87 325.9 398 49.2
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.8e-86 323.9 433 46.7
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 8.1e-86 322.4 434 46.5
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 1.4e-85 321.6 444 45.9
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 4.4e-84 316.6 476 45.8
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.7e-83 314.7 391 47.8
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 2.9e-83 313.9 464 44.6
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 6.4e-83 312.8 443 45.4
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 6.4e-83 312.8 439 47.8
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 1.1e-82 312.0 417 48.0
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.1e-82 309.3 410 47.6
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 9.3e-82 308.9 512 43.0
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 2.7e-81 307.4 363 49.3
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.3e-80 304.3 508 42.1
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 8.7e-80 302.4 402 47.0
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 5.6e-79 299.7 428 46.5
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 7.3e-79 299.3 401 46.9
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 4.8e-78 296.6 374 46.8
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 4.0e-77 293.5 448 45.1
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 7.6e-76 289.3 431 45.7
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.3e-75 288.5 481 41.8
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 3.8e-75 287.0 507 41.4
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 4.9e-75 286.6 452 45.8
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 8.4e-75 285.8 386 47.9
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.4e-74 285.0 481 42.6
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 3.2e-74 283.9 452 42.7
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 7.1e-74 282.7 271 58.7
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.6e-73 280.0 262 58.4
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 3.9e-72 276.9 262 58.0
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 3.9e-72 276.9 481 41.2
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 3.9e-72 276.9 399 45.6
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 6.7e-72 276.2 462 41.1
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 6.7e-72 276.2 420 44.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.1e-71 275.4 406 46.8
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.5e-71 275.0 320 52.5
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.9e-71 274.6 431 44.1
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 5.6e-71 273.1 410 45.6
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 7.4e-71 272.7 417 44.4
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.1e-70 271.2 501 39.3
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.8e-70 270.8 396 45.5
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 2.8e-70 270.8 384 45.6
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.1e-69 268.9 400 45.0
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.4e-69 267.7 429 45.0
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 4.0e-69 266.9 460 41.1
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 5.3e-69 266.5 436 42.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 9.0e-69 265.8 430 42.8
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.6e-68 264.2 613 40.1
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 3.4e-68 263.8 409 44.5
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.5e-68 263.5 528 38.4
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.0e-67 262.3 417 42.4
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-67 261.9 428 39.5
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 3.8e-67 260.4 454 41.2
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 4.9e-67 260.0 422 42.4
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 6.5e-67 259.6 441 42.4
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 1.1e-66 258.8 431 42.9
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.9e-66 258.1 429 41.5
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 3.2e-66 257.3 423 42.3
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 3.2e-66 257.3 423 42.3
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.1e-65 254.6 369 44.7
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 2.7e-65 254.2 443 40.2
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.0e-64 252.3 397 41.6
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.5e-63 248.4 397 41.3
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 9.0e-61 239.2 353 46.5
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 4.5e-60 236.9 420 41.2
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 5.8e-60 236.5 387 43.7
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.0e-59 235.7 443 39.5
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.7e-59 235.0 188 64.4
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 3.0e-56 224.2 461 39.9
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.1e-55 222.2 454 39.2
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 4.3e-55 220.3 183 61.7
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 5.7e-55 219.9 403 41.4
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 4.1e-53 213.8 406 37.9
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 5.3e-53 213.4 405 38.5
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 5.3e-53 213.4 234 51.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 4.5e-52 210.3 403 37.7
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.0e-51 209.1 479 35.5
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 2.2e-51 208.0 207 54.1
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 2.5e-50 204.5 206 51.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 3.6e-49 200.7 485 34.4
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.8e-46 191.0 354 43.5
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.1e-42 179.1 401 34.9
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 3.2e-42 177.6 186 53.8
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 6.7e-40 169.9 136 57.4
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 6.3e-38 163.3 205 45.9
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 2.4e-37 161.4 189 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.0e-35 156.0 217 43.8
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 5.0e-35 153.7 147 54.4
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 4.2e-34 150.6 150 52.7
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 8.0e-33 146.4 136 54.4
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 8.0e-33 146.4 152 50.7
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 3.1e-29 134.4 136 54.4
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 9.1e-29 132.9 301 36.9
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 2.0e-28 131.7 120 57.5
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 1.3e-22 112.5 97 64.9
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 3.2e-18 97.8 86 58.1
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 4.7e-17 94.0 71 60.6
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 6.3e-14 83.6 195 32.3
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 9.2e-13 79.7 162 33.3
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 4.0e-08 64.3 89 41.6
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.3e-06 59.3 44 61.4


User provided reference genes

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