Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 0.0e+00 3255.7 1784 100.0
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 0.0e+00 1239.2 1704 48.7
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 0.0e+00 1112.8 1859 44.2
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 3.0e-308 1062.8 1781 42.1
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 3.0e-308 1062.8 1781 42.1
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 4.2e-286 989.2 1780 40.7
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 6.0e-277 958.7 1883 42.1
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 2.3e-276 956.8 1773 40.4
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 2.5e-275 953.4 1807 39.1
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 6.9e-273 945.3 1778 39.8
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 6.5e-271 938.7 1751 39.7
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 4.2e-270 936.0 1786 39.2
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 6.1e-269 932.2 1703 40.6
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 2.5e-267 926.8 1926 38.4
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 8.8e-260 901.7 1688 39.3
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 3.7e-258 896.3 1809 39.6
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 7.2e-254 882.1 1779 38.3
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 7.9e-253 878.6 1781 37.7
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.5e-251 874.4 1779 37.7
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 1.1e-246 858.2 1817 36.9
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 6.7e-244 849.0 1974 37.6
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 8.8e-244 848.6 1816 37.4
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 5.3e-241 839.3 1758 38.2
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 7.7e-240 835.5 1997 37.9
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 1.0e-239 835.1 1958 36.9
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 2.7e-237 827.0 1934 37.6
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.8e-234 817.0 1793 36.8
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 8.3e-234 815.5 1934 37.7
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 6.8e-228 795.8 1732 36.3
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.4e-227 793.5 2204 35.9
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 1.1e-222 778.5 1746 35.3
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.0e-220 771.9 1760 36.8
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 3.4e-219 766.9 1774 35.6
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 3.9e-215 753.4 1715 34.5
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 3.3e-214 750.4 1788 34.3
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 9.5e-214 748.8 1785 34.9
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.7e-213 746.5 1720 34.5
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 4.0e-212 743.4 1732 35.0
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 3.4e-211 740.3 1801 35.3
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 9.2e-209 732.3 1776 35.3
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 3.5e-208 730.3 1774 35.2
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 6.8e-204 716.1 1903 33.4
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.5e-203 714.9 1791 34.0
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 5.8e-203 713.0 1803 34.4
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 2.9e-202 710.7 1925 33.2
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 4.9e-202 709.9 1895 34.0
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.2e-201 707.2 1714 36.1
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 5.4e-201 706.4 1748 34.3
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 3.5e-200 703.7 1730 34.2
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 1.1e-198 698.7 1739 35.0
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 6.8e-196 689.5 1807 33.6
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 8.9e-196 689.1 1720 34.6
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 2.4e-193 681.0 1833 33.3
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 9.2e-193 679.1 1855 33.2
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 3.5e-192 677.2 1794 33.8
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 6.0e-192 676.4 1841 33.8
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.6e-189 668.3 1828 32.3
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.6e-189 667.2 1797 33.1
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 4.7e-189 666.8 1850 32.9
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 4.7e-189 666.8 1791 32.3
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 2.4e-188 664.5 1831 33.5
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-187 661.4 1854 32.4
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 2.6e-187 661.0 1751 33.8
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 3.4e-187 660.6 1819 32.5
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 6.4e-186 656.4 1361 37.2
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.1e-185 655.6 1773 33.4
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 2.7e-184 651.0 1786 33.0
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 3.0e-183 647.5 1815 32.3
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 3.0e-183 647.5 1736 32.8
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.4e-180 638.6 1755 33.2
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.1e-177 629.0 1835 34.9
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 6.2e-173 613.2 1707 32.6
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.1e-172 612.5 1743 32.5
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 6.9e-172 609.8 1135 37.8
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.2e-168 599.0 1779 31.9
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 3.7e-165 587.4 891 43.4
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 2.1e-157 561.6 1704 32.3
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.3e-150 537.3 1631 31.9
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.8e-148 531.9 1030 35.8
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 4.3e-142 510.8 1708 29.4
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 4.5e-139 500.7 1469 34.3
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.7e-133 482.3 1726 29.3
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.1e-132 479.6 1343 33.4
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.1e-132 479.6 1343 33.4
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 9.1e-132 476.5 1123 33.2
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 2.5e-129 468.4 1408 32.4
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 7.2e-121 440.3 959 35.6
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.1e-116 426.4 1709 28.4
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 9.1e-116 423.3 978 36.5
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 4.2e-113 414.5 1034 41.6
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 6.1e-112 410.6 895 40.3
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.5e-110 403.7 860 34.3
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.5e-102 379.4 878 36.8
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.5e-102 379.4 801 39.8
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.4e-95 356.3 936 31.9
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 8.9e-95 353.6 702 38.0
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 8.9e-95 353.6 734 36.5
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-84 319.3 843 34.5
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 3.1e-79 302.0 520 35.0
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.7e-74 286.2 517 40.4
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.2e-69 269.2 879 31.3
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.2e-69 269.2 513 35.9
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.1e-63 248.8 195 66.2
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 6.9e-63 247.7 1752 25.5
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 5.8e-62 244.6 1154 25.9
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 3.2e-60 238.8 1750 24.2
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 2.7e-59 235.7 235 51.9
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 8.1e-56 224.2 221 52.9
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 8.1e-56 224.2 245 49.0
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.1e-55 223.8 192 57.3
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 8.4e-53 214.2 977 28.5
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 2.7e-51 209.1 636 34.7
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.8e-50 206.5 237 43.9
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.5e-46 193.4 148 68.9
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 2.0e-46 193.0 185 50.8
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.4e-46 192.2 167 62.9
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.3e-45 190.3 195 54.9
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.2e-44 185.7 490 33.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.1e-39 169.1 589 32.9
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.7e-37 163.3 641 34.5
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.4e-36 160.2 231 45.5
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 9.3e-36 157.5 141 60.3
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 4.3e-33 148.7 796 32.7
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.5e-30 140.2 1001 26.4
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.5e-30 138.7 148 48.6
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 4.2e-28 132.1 270 41.1
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.6e-27 130.2 827 26.7
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.3e-24 120.6 145 41.4
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.4e-23 117.1 114 63.2
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 6.9e-23 114.8 547 30.2
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.5e-20 106.3 171 37.4
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 4.2e-20 105.5 237 35.4
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 7.2e-20 104.8 152 38.8
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 6.7e-18 98.2 91 52.7
SalBow3G1183 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.8e-15 90.1 137 42.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.6e-14 86.3 68 55.9
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.9e-13 82.8 297 26.3
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.9e-13 82.8 68 55.9
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 1.5e-12 80.5 426 33.1
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 4.2e-12 79.0 68 54.4
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.1e-11 76.6 63 55.6
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 5.2e-10 72.0 195 30.3
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 1.2e-09 70.9 69 52.2
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.0e-09 70.1 349 28.9
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-09 70.1 59 55.9
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.4e-07 63.9 61 49.2
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 7.7e-06 58.2 128 30.5


User provided reference genes

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