Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 2.5e-216 755.4 434 100.0
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-108 397.5 509 46.6
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-108 397.5 509 46.6
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 7.9e-106 388.3 311 64.6
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 1.2e-101 374.4 522 47.7
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 3.3e-96 356.3 526 50.6
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 4.7e-90 335.9 529 41.8
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 5.7e-88 328.9 525 47.2
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-87 327.8 500 50.4
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 9.1e-86 321.6 529 40.5
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 1.3e-84 317.8 523 48.2
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 1.3e-84 317.8 528 47.3
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 1.2e-82 311.2 527 47.6
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 4.0e-81 306.2 519 47.8
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 5.2e-81 305.8 529 46.5
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 1.3e-79 301.2 524 47.1
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.7e-79 300.8 514 47.3
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 1.8e-78 297.4 526 46.4
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 2.4e-78 297.0 526 46.4
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 4.5e-77 292.7 518 46.3
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 1.0e-76 291.6 270 55.6
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 8.5e-76 288.5 526 45.8
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 2.1e-74 283.9 284 52.1
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 4.7e-74 282.7 527 45.9
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 6.1e-74 282.3 534 44.9
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 1.8e-73 280.8 376 53.2
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 4.4e-72 276.2 346 58.1
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 9.8e-72 275.0 373 55.8
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 1.7e-71 274.2 373 56.0
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 2.8e-71 273.5 517 44.7
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 2.8e-71 273.5 517 44.7
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 1.8e-70 270.8 485 38.1
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.4e-70 270.4 283 51.2
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 3.1e-70 270.0 522 41.2
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 4.1e-70 269.6 373 54.4
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 4.1e-70 269.6 517 41.0
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.1e-70 269.6 523 43.0
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 1.2e-69 268.1 373 56.0
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 1.6e-69 267.7 522 43.7
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 5.9e-69 265.8 517 44.1
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.5e-67 261.2 517 44.1
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 3.3e-67 260.0 373 55.8
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 8.0e-66 255.4 307 45.3
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 8.0e-66 255.4 305 45.2
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 1.0e-65 255.0 377 53.3
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.4e-65 254.6 165 72.7
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 1.4e-65 254.6 531 43.7
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.8e-65 254.2 531 43.5
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.0e-65 253.1 508 42.9
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 6.8e-65 252.3 373 55.0
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.5e-64 251.1 485 36.7
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 2.0e-64 250.8 373 55.0
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 4.4e-64 249.6 279 48.0
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 5.7e-64 249.2 485 36.5
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 1.7e-63 247.7 274 48.2
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 2.2e-63 247.3 498 36.3
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 2.9e-63 246.9 276 48.2
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 8.3e-63 245.4 279 47.3
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.4e-62 244.6 303 44.9
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 1.8e-62 244.2 530 41.7
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 2.4e-62 243.8 284 47.2
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 5.4e-62 242.7 380 52.6
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 7.0e-62 242.3 284 46.5
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 9.2e-62 241.9 530 42.3
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.2e-61 241.5 485 35.9
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 3.5e-61 240.0 377 50.4
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 5.9e-61 239.2 524 42.0
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 7.8e-61 238.8 284 45.8
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 1.3e-60 238.0 284 45.4
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 1.7e-60 237.7 276 46.0
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 2.3e-60 237.3 284 46.8
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 1.1e-59 235.0 284 46.8
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 1.9e-59 234.2 530 42.1
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 5.6e-59 232.6 277 45.5
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 5.6e-59 232.6 147 74.1
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 5.6e-59 232.6 504 41.5
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 9.5e-59 231.9 284 45.4
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 1.2e-58 231.5 276 45.3
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.6e-58 231.1 147 73.5
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 1.6e-58 231.1 520 36.5
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.1e-58 230.7 160 68.8
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 2.1e-58 230.7 276 44.9
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 1.0e-57 228.4 133 77.4
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 1.4e-57 228.0 520 40.2
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 2.3e-57 227.3 276 44.6
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 8.9e-57 225.3 279 44.1
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 2.0e-56 224.2 276 44.6
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 2.0e-56 224.2 148 72.3
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 2.0e-56 224.2 276 44.6
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 2.6e-56 223.8 284 44.7
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 2.6e-56 223.8 146 70.5
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 7.5e-56 222.2 286 44.4
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 9.8e-56 221.9 393 48.6
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 9.8e-56 221.9 300 43.3
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 9.8e-56 221.9 211 66.8
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 2.2e-55 220.7 285 44.6
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 2.9e-55 220.3 132 72.7
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 1.4e-54 218.0 303 41.6
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 1.7e-52 211.1 134 72.4
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 5.0e-52 209.5 134 71.6
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 5.0e-52 209.5 134 71.6
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 1.9e-51 207.6 134 70.9
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 5.6e-51 206.1 134 70.1
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 7.3e-51 205.7 131 70.2
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 1.1e-49 201.8 158 59.5
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 7.6e-40 169.1 280 38.6
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 1.3e-31 141.7 476 34.0
AT5G14350 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 1.9e-30 137.9 220 38.2
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 1.3e-28 131.7 131 45.8
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 4.3e-27 126.7 280 30.4
Actinidia05956 Actinidia chinensis HOM05D006844 ORTHO05D008504 2.8e-26 124.0 227 57.7
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 3.4e-24 117.1 268 31.0
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 8.7e-20 102.4 114 41.2
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 4.0e-17 93.6 233 30.0
Cpa.g.sc130.59 Carica papaya HOM05D006844 ORTHO05D008504 7.1e-14 82.8 142 58.5
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 3.0e-12 77.4 59 66.1
Hma1.2p1_0386F.1_g141780 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.4e-09 67.8 264 22.0
TPR.G22484 Trifolium pratense HOM05D002479 ORTHO05D002675 2.6e-08 64.3 127 33.1
vmacro05905 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 2.6e-08 64.3 43 69.8
CSS0026566 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.8e-08 63.2 149 30.9
CSS0032076 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.8e-08 63.2 149 30.9
AL3G37450 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 1.3e-07 62.0 134 29.9
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.3e-07 62.0 233 24.5
Lj6g0009664 Lotus japonicus HOM05D002479 ORTHO05D002675 1.7e-07 61.6 185 29.2
Carub.0003s2318 Capsella rubella HOM05D002479 ORTHO05D002675 2.2e-07 61.2 128 31.2
Ca_12209_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 2.2e-07 61.2 127 30.7
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 3.8e-07 60.5 134 28.4
AT3G23020 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 3.8e-07 60.5 127 31.5
Migut.D02535 Erythranthe guttata HOM05D000001 ORTHO05D010412 4.9e-07 60.1 197 22.3
Nn1g02530 Nelumbo nucifera HOM05D002479 ORTHO05D002675 4.9e-07 60.1 108 37.0
VMungo0720G1484 Vigna mungo HOM05D002479 ORTHO05D002675 4.9e-07 60.1 129 33.3
PSO063G5446 Papaver somniferum HOM05D000001 ORTHO05D000003 6.5e-07 59.7 282 19.9
RcHm_v2.0_Chr4g0438541 Rosa chinensis HOM05D005622 ORTHO05D002854 6.5e-07 59.7 195 27.2
CSS0028078 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009704 8.4e-07 59.3 259 22.4
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 8.4e-07 59.3 134 29.1
BcaB06g26423 Brassica carinata HOM05D002479 ORTHO05D002675 1.4e-06 58.5 134 29.1
CARHR098950 Cardamine hirsuta HOM05D002479 ORTHO05D002675 1.4e-06 58.5 128 30.5
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 1.4e-06 58.5 127 30.7
Medtr5g042370 Medicago truncatula HOM05D002479 ORTHO05D002675 1.4e-06 58.5 127 30.7
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.4e-06 58.5 272 20.2
BcaC05g27986 Brassica carinata HOM05D002479 ORTHO05D002675 1.9e-06 58.2 134 29.1
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 1.9e-06 58.2 134 29.1
C05p39950 Brassica napus HOM05D002479 ORTHO05D002675 1.9e-06 58.2 134 29.1
BolC5t32740H Brassica oleracea HOM05D002479 ORTHO05D002675 1.9e-06 58.2 134 29.1
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 1.9e-06 58.2 134 29.1
Lalb_Chr01g0020831 Lupinus albus HOM05D002479 ORTHO05D002675 1.9e-06 58.2 127 33.1
arahy.Tifrunner.gnm1.ann1.L9MN9H Arachis hypogaea HOM05D000001 ORTHO05D009704 3.2e-06 57.4 237 21.9
Sopen04g001420 Solanum pennellii HOM05D005622 ORTHO05D002854 3.2e-06 57.4 220 24.1
arahy.Tifrunner.gnm1.ann1.33SUC1 Arachis hypogaea HOM05D000001 ORTHO05D009704 4.2e-06 57.0 237 21.9
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.5e-06 56.6 200 24.0
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 5.5e-06 56.6 122 24.6
ECA246G3879 Erigeron canadensis HOM05D005622 ORTHO05D002854 5.5e-06 56.6 192 25.0
Aa31LG6G15680 Aethionema arabicum HOM05D000001 ORTHO05D000003 7.1e-06 56.2 203 21.7
AagrBONN_evm.TU.Sc2ySwM_228.204 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.3e-06 55.8 162 24.7
QL03p000909 Quercus lobata HOM05D005622 ORTHO05D002854 9.3e-06 55.8 192 24.0
unitig_62.g23524 Utricularia gibba HOM05D000001 ORTHO05D010004 9.3e-06 55.8 185 22.7


User provided reference genes

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