Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu022849.2 Olea europaea HOM05D004050 ORTHO05D005162 4.0e-31 137.5 71 100.0
Nn2g12429 Nelumbo nucifera HOM05D004050 ORTHO05D005162 1.7e-21 105.5 55 92.7
arahy.Tifrunner.gnm1.ann1.4GFI35 Arachis hypogaea HOM05D004050 ORTHO05D005162 2.2e-21 105.1 69 73.9
Nn8g40347 Nelumbo nucifera HOM05D004050 ORTHO05D005162 2.2e-21 105.1 68 76.5
VMungo0540G1292 Vigna mungo HOM05D004050 ORTHO05D005162 2.9e-21 104.8 62 82.3
CAN.G986.49 Capsicum annuum HOM05D004050 ORTHO05D005162 3.7e-21 104.4 55 90.9
Phvul.006G109900 Phaseolus vulgaris HOM05D004050 ORTHO05D005162 3.7e-21 104.4 62 82.3
Solyc01g095480.4 Solanum lycopersicum HOM05D004050 ORTHO05D005162 3.7e-21 104.4 55 90.9
Sopen01g039230 Solanum pennellii HOM05D004050 ORTHO05D005162 3.7e-21 104.4 55 90.9
PGSC0003DMG400000206 Solanum tuberosum HOM05D004050 ORTHO05D005162 3.7e-21 104.4 55 90.9
Cpa.g.sc194.16 Carica papaya HOM05D004050 ORTHO05D005162 4.9e-21 104.0 55 92.7
Duzib138G1937 Durio zibethinus HOM05D004050 ORTHO05D005162 4.9e-21 104.0 55 92.7
CiPaw.05G179000 Carya illinoinensis HOM05D004050 ORTHO05D005162 6.4e-21 103.6 59 84.7
Ciclev10021944m.g Citrus clementina HOM05D004050 ORTHO05D005162 6.4e-21 103.6 55 92.7
Nitab4.5_0000305g0180 Nicotiana tabacum HOM05D004050 ORTHO05D005162 6.4e-21 103.6 55 89.1
Nitab4.5_0007386g0030 Nicotiana tabacum HOM05D004050 ORTHO05D005162 6.4e-21 103.6 55 89.1
MSTRG.20884 Avicennia marina HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 90.9
Haze_19347 Corylus avellana HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 90.9
Haze_19365 Corylus avellana HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 90.9
Dinv32549 Davidia involucrata HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 90.9
Dinv43889 Davidia involucrata HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 90.9
Hma1.2p1_0384F.1_g140990 Hydrangea macrophylla HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 90.9
Peaxi162Scf01012g00123 Petunia axillaris HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 89.1
RcHm_v2.0_Chr6g0268411 Rosa chinensis HOM05D004050 ORTHO05D005162 8.3e-21 103.2 55 89.1
CANSAT56G4345 Cannabis sativa HOM05D004050 ORTHO05D005162 1.1e-20 102.8 55 89.1
Cc02_g38930 Coffea canephora HOM05D004050 ORTHO05D005162 1.1e-20 102.8 55 89.1
Migut.B01830 Erythranthe guttata HOM05D004050 ORTHO05D005162 1.1e-20 102.8 55 89.1
Manes.01G249700 Manihot esculenta HOM05D004050 ORTHO05D005162 1.1e-20 102.8 55 90.9
Sc01g0003000 Simmondsia chinensis HOM05D004050 ORTHO05D005162 1.1e-20 102.8 55 90.9
FAN07G1668 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.4e-20 102.4 55 89.1
FAN20G0802 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.4e-20 102.4 55 89.1
FAN24G2599 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.4e-20 102.4 55 89.1
CiPaw.06G050500 Carya illinoinensis HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 89.1
FvH4_4g15330 Fragaria vesca HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 87.3
FAN12G2119 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 87.3
Glyma.17G102000 Glycine max HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 89.1
Glyma.19G252800 Glycine max HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 89.1
Gohir.A11G094100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 90.9
Gohir.D11G099100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 90.9
Gorai.007G105300 Gossypium raimondii HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 90.9
Lj1g0013952 Lotus japonicus HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 89.1
Psat3g003960 Pisum sativum HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 89.1
SalBow3G2972 Salvia bowleyana HOM05D004050 ORTHO05D005162 1.9e-20 102.1 62 82.3
Thecc.01G348200 Theobroma cacao HOM05D004050 ORTHO05D005162 1.9e-20 102.1 55 89.1
Eucgr.F04376 Eucalyptus grandis HOM05D004050 ORTHO05D005162 2.4e-20 101.7 55 89.1
Prupe.1G011800 Prunus persica HOM05D004050 ORTHO05D005162 2.4e-20 101.7 55 90.9
QL11p030149 Quercus lobata HOM05D004050 ORTHO05D005162 2.4e-20 101.7 55 89.1
TAR375G0239 Trochodendron aralioides HOM05D004050 ORTHO05D005162 2.4e-20 101.7 55 87.3
unitig_747.g21326 Utricularia gibba HOM05D004050 ORTHO05D005162 2.4e-20 101.7 55 89.1
ATR0772G162 Amborella trichopoda HOM05D004050 ORTHO05D005162 3.2e-20 101.3 55 89.1
arahy.Tifrunner.gnm1.ann1.T01U3X Arachis hypogaea HOM05D004050 ORTHO05D005162 3.2e-20 101.3 65 73.8
EL10Ac1g00318 Beta vulgaris HOM05D004050 ORTHO05D005162 3.2e-20 101.3 55 89.1
AUR62023504 Chenopodium quinoa HOM05D004050 ORTHO05D005162 3.2e-20 101.3 55 87.3
COL.COLO4_27283 Corchorus olitorius HOM05D004050 ORTHO05D005162 3.2e-20 101.3 55 90.9
Lsat_1_v5_gn_4_33601 Lactuca sativa HOM05D004050 ORTHO05D005162 3.2e-20 101.3 59 84.7
MD16G1191700 Malus domestica HOM05D004050 ORTHO05D005162 3.2e-20 101.3 55 89.1
Hund16692 Selenicereus undatus HOM05D000023 ORTHO05D005162 3.2e-20 101.3 55 89.1
TPR.G4745 Trifolium pratense HOM05D004050 ORTHO05D005162 3.2e-20 101.3 55 89.1
HanXRQChr17g0562601 Helianthus annuus HOM05D004050 ORTHO05D005162 4.1e-20 100.9 55 89.1
Lalb_Chr05g0217801 Lupinus albus HOM05D004050 ORTHO05D005162 4.1e-20 100.9 55 87.3
Rhsim07G0007400 Rhododendron simsii HOM05D004050 ORTHO05D005162 4.1e-20 100.9 55 87.3
TAR636G1595 Trochodendron aralioides HOM05D004050 ORTHO05D005162 4.1e-20 100.9 55 87.3
vmacro12382 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 4.1e-20 100.9 55 87.3
vmacro13201 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 4.1e-20 100.9 55 87.3
arahy.Tifrunner.gnm1.ann1.90L2UZ Arachis hypogaea HOM05D004050 ORTHO05D005162 5.4e-20 100.5 55 85.5
CDE10G0991 Ceratophyllum demersum HOM05D004050 ORTHO05D005162 5.4e-20 100.5 55 87.3
ECA234G2549 Erigeron canadensis HOM05D004050 ORTHO05D005162 7.0e-20 100.1 55 87.3
Lj9A592T69 Lonicera japonica HOM05D004050 ORTHO05D005162 7.0e-20 100.1 55 87.3
PSO063G2231 Papaver somniferum HOM05D004050 ORTHO05D005162 7.0e-20 100.1 55 87.3
PSO782G0629 Papaver somniferum HOM05D004050 ORTHO05D005162 7.0e-20 100.1 55 87.3
Potri.014G094300 Populus trichocarpa HOM05D004050 ORTHO05D005162 7.0e-20 100.1 55 87.3
Sabra14G0068900 Salix brachista HOM05D004050 ORTHO05D005162 7.0e-20 100.1 55 87.3
GSVIVG01027043001 Vitis vinifera HOM05D004050 ORTHO05D005162 7.0e-20 100.1 55 87.3
Ca_09490_v3 Cicer arietinum L. HOM05D004050 ORTHO05D005162 9.2e-20 99.8 55 85.5
Medtr7g116920 Medicago truncatula HOM05D004050 ORTHO05D005162 9.2e-20 99.8 55 87.3
Sed0000372 Sechium edule HOM05D004050 ORTHO05D005162 9.2e-20 99.8 55 85.5
Aqoxy7G00205 Aquilegia oxysepala HOM05D004050 ORTHO05D005162 1.2e-19 99.4 55 87.3
FvH4_2g10710 Fragaria vesca HOM05D004050 ORTHO05D005162 1.2e-19 99.4 55 87.3
PSO675G5387 Papaver somniferum HOM05D004050 ORTHO05D005162 1.6e-19 99.0 55 87.3
SGA_v2.0_scaffold5G02982 Striga asiatica HOM05D004050 ORTHO05D005162 1.6e-19 99.0 54 87.0
CSS0013339 Camellia sinensis var. sinensis HOM05D004050 ORTHO05D005162 2.7e-19 98.2 55 85.5
THA.LOC104805548 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 2.7e-19 98.2 55 85.5
ClCG02G014060 Citrullus lanatus HOM05D004050 ORTHO05D005162 3.5e-19 97.8 55 83.6
PGR004G0443 Punica granatum HOM05D004050 ORTHO05D005162 3.5e-19 97.8 55 87.3
SEGI_00286 Sequoiadendron giganteum HOM05D004050 ORTHO05D005162 1.0e-18 96.3 55 83.6
TWI14G0799 Tripterygium wilfordii HOM05D004050 ORTHO05D005162 1.3e-18 95.9 55 83.6
AL5G44010 Arabidopsis lyrata HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 85.5
AT3G61620 Arabidopsis thaliana HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 85.5
A07p25630 Brassica napus HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 85.5
BolC6t37931H Brassica oleracea HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 83.6
BraA07t30204Z Brassica rapa HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 85.5
Carub.0005s2831 Capsella rubella HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 85.5
Carub.0006s1683 Capsella rubella HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 85.5
FAN15G2127 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.7e-18 95.5 51 90.2
Sp5g01790 Schrenkiella parvula HOM05D004050 ORTHO05D005162 1.7e-18 95.5 55 85.5
Aa31LG10G15380 Aethionema arabicum HOM05D004050 ORTHO05D005162 2.3e-18 95.1 55 81.8
BcaB02g07365 Brassica carinata HOM05D004050 ORTHO05D005162 2.3e-18 95.1 55 83.6
BcaC08g45143 Brassica carinata HOM05D004050 ORTHO05D005162 2.3e-18 95.1 55 83.6
C06p27620 Brassica napus HOM05D004050 ORTHO05D005162 2.3e-18 95.1 55 83.6
CARHR171930 Cardamine hirsuta HOM05D004050 ORTHO05D005162 2.3e-18 95.1 55 83.6
Thhalv10006211m.g Eutrema salsugineum HOM05D004050 ORTHO05D005162 2.3e-18 95.1 55 83.6
A09p53690 Brassica napus HOM05D004050 ORTHO05D005162 3.0e-18 94.7 55 83.6
THA.LOC104817331 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 3.0e-18 94.7 55 81.8
Actinidia28492 Actinidia chinensis HOM05D004050 ORTHO05D005162 3.9e-18 94.4 54 83.3
BcaC07g40663 Brassica carinata HOM05D004050 ORTHO05D005162 3.9e-18 94.4 55 83.6
C08p36470 Brassica napus HOM05D004050 ORTHO05D005162 3.9e-18 94.4 55 83.6
BolC8t51230H Brassica oleracea HOM05D004050 ORTHO05D005162 3.9e-18 94.4 55 83.6
BraA09t40791Z Brassica rapa HOM05D004050 ORTHO05D005162 3.9e-18 94.4 55 83.6
MELO3C011748.2 Cucumis melo HOM05D004050 ORTHO05D005162 3.9e-18 94.4 55 78.2
Sed0001564 Sechium edule HOM05D004050 ORTHO05D005162 6.6e-18 93.6 55 78.2
Mapoly0020s0167 Marchantia polymorpha HOM05D004050 ORTHO05D005162 8.6e-18 93.2 55 78.2
CBR_g46394 Chara braunii HOM05D004050 ORTHO05D005162 1.5e-17 92.4 55 78.2
SMO196G0022 Selaginella moellendorffii HOM05D004050 ORTHO05D005162 1.5e-17 92.4 55 81.8
CsaV3_5G006110 Cucumis sativus L. HOM05D004050 ORTHO05D005162 1.9e-17 92.0 55 76.4
MBI07_g20436_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 4.3e-17 90.9 58 82.8
Os09g0252000 Oryza sativa ssp. japonica HOM05D004050 ORTHO05D005162 5.6e-17 90.5 56 80.4
SHI28346 Sapria himalayana HOM05D004050 ORTHO05D005162 5.6e-17 90.5 55 80.0
Zm00001eb343390 Zea mays HOM05D004050 ORTHO05D005162 5.6e-17 90.5 56 80.4
SGA_v2.0_scaffold548G52849 Striga asiatica HOM05D004050 ORTHO05D005162 2.1e-16 88.6 70 67.1
AagrBONN_evm.TU.Sc2ySwM_369.383 Anthoceros agrestis HOM05D004050 ORTHO05D005162 1.8e-15 85.5 55 76.4
Pp3s48_50 Physcomitrium patens HOM05D004050 ORTHO05D005162 5.2e-15 84.0 54 75.9
Cre06.g284500 Chlamydomonas reinhardtii HOM05D004050 ORTHO05D005162 1.5e-14 82.4 59 64.4
CDE10G0765 Ceratophyllum demersum HOM05D004050 ORTHO05D013487 1.7e-13 79.0 56 71.4
MCO13G612 Micromonas commoda HOM05D004050 ORTHO05D005162 1.4e-12 75.9 54 66.7
Oeu036584.1 Olea europaea HOM05D004050 ORTHO05D005162 1.2e-11 72.8 37 97.3
RcHm_v2.0_Chr4g0416511 Rosa chinensis HOM05D004050 ORTHO05D005162 2.7e-11 71.6 38 89.5
RcHm_v2.0_Chr7g0217091 Rosa chinensis HOM05D004050 ORTHO05D005162 4.6e-11 70.9 38 89.5
PRCOL_00005249 Prasinoderma coloniale HOM05D004050 ORTHO05D005162 6.0e-11 70.5 54 64.8
RcHm_v2.0_Chr6g0271671 Rosa chinensis HOM05D004050 ORTHO05D005162 1.0e-10 69.7 37 89.2
TPR.G18216 Trifolium pratense HOM05D004050 ORTHO05D005162 3.0e-10 68.2 38 86.8
MD01G1224600 Malus domestica HOM05D004050 ORTHO05D005162 3.9e-10 67.8 38 86.8
MBI07_g20434_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 8.6e-10 66.6 37 86.5
Glyma.03G255200 Glycine max HOM05D004050 ORTHO05D005162 1.2e-08 62.8 38 76.3
DCAR_006962 Daucus carota HOM05D004050 ORTHO05D005162 1.6e-08 62.4 37 83.8
Medtr3g072850 Medicago truncatula HOM05D004050 ORTHO05D005162 1.6e-08 62.4 34 82.4
Cfa022832 Carpinus fangiana HOM05D004050 ORTHO05D005162 2.0e-06 55.5 46 58.7
Actinidia02806 Actinidia chinensis HOM05D004050 ORTHO05D005162 3.4e-06 54.7 55 58.2
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 3.4e-06 54.7 51 52.9
EL10Ac2g04031 Beta vulgaris HOM05D005175 ORTHO05D006302 4.4e-06 54.3 44 56.8
AUR62004446 Chenopodium quinoa HOM05D004050 ORTHO05D005162 5.8e-06 53.9 29 82.8
CBR_g26279 Chara braunii HOM05D005157 ORTHO05D006652 7.6e-06 53.5 52 50.0


User provided reference genes

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