Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021578.1 Olea europaea HOM05D001117 ORTHO05D000930 3.1e-39 165.2 125 100.0
Cc02_g12170 Coffea canephora HOM05D001117 ORTHO05D000930 6.2e-11 71.2 60 55.0
Actinidia26981 Actinidia chinensis HOM05D000893 ORTHO05D000930 1.4e-10 70.1 49 63.3
MSTRG.7274 Avicennia marina HOM05D001117 ORTHO05D000930 4.0e-10 68.6 68 51.5
Actinidia05560 Actinidia chinensis HOM05D001117 ORTHO05D000930 3.4e-09 65.5 49 59.2
CSS0046446 Camellia sinensis var. sinensis HOM05D001117 ORTHO05D000930 3.4e-09 65.5 49 59.2
SalBow8G1985 Salvia bowleyana HOM05D001117 ORTHO05D000930 5.8e-09 64.7 56 53.6
Cc05_g05670 Coffea canephora HOM05D001117 ORTHO05D000930 1.3e-08 63.5 69 42.0
EL10Ac8g19983 Beta vulgaris HOM05D001117 ORTHO05D000930 2.2e-08 62.8 46 56.5
CSS0045354 Camellia sinensis var. sinensis HOM05D001117 ORTHO05D000930 2.2e-08 62.8 73 45.2
DCAR_009704 Daucus carota HOM05D001117 ORTHO05D000930 2.2e-08 62.8 44 56.8
Dinv22347 Davidia involucrata HOM05D001117 ORTHO05D000930 2.2e-08 62.8 44 59.1
Gohir.A06G130300 Gossypium hirsutum HOM05D001117 ORTHO05D000930 2.2e-08 62.8 48 56.2
Gohir.D06G127050 Gossypium hirsutum HOM05D001117 ORTHO05D000930 2.2e-08 62.8 48 56.2
Gorai.010G148100 Gossypium raimondii HOM05D001117 ORTHO05D000930 2.2e-08 62.8 48 56.2
Peaxi162Scf00257g10112 Petunia axillaris HOM05D001117 ORTHO05D000930 2.2e-08 62.8 44 61.4
Migut.M01231 Erythranthe guttata HOM05D001117 ORTHO05D000930 2.9e-08 62.4 44 56.8
Dinv02569 Davidia involucrata HOM05D001117 ORTHO05D000930 3.7e-08 62.0 52 51.9
Dinv12207 Davidia involucrata HOM05D001117 ORTHO05D000930 3.7e-08 62.0 52 51.9
Nitab4.5_0005620g0060 Nicotiana tabacum HOM05D001117 ORTHO05D000930 3.7e-08 62.0 66 47.0
vmacro03783 Vaccinium macrocarpon HOM05D000893 ORTHO05D000699 3.7e-08 62.0 67 44.8
PGSC0003DMG400025024 Solanum tuberosum HOM05D001117 ORTHO05D000930 4.9e-08 61.6 49 55.1
Actinidia30497 Actinidia chinensis HOM05D001117 ORTHO05D000930 6.4e-08 61.2 74 44.6
Potri.004G026900 Populus trichocarpa HOM05D001117 ORTHO05D000930 8.3e-08 60.8 62 46.8
Prupe.4G033600 Prunus persica HOM05D001117 ORTHO05D000930 8.3e-08 60.8 58 50.0
Prupe.4G192700 Prunus persica HOM05D001117 ORTHO05D000930 8.3e-08 60.8 71 46.5
PGR142G1034 Punica granatum HOM05D001117 ORTHO05D000930 8.3e-08 60.8 44 59.1
TAR626G1563 Trochodendron aralioides HOM05D001117 ORTHO05D000930 8.3e-08 60.8 70 42.9
GSVIVG01014471001 Vitis vinifera HOM05D001117 ORTHO05D000930 8.3e-08 60.8 49 55.1
Cfa020485 Carpinus fangiana HOM05D001117 ORTHO05D000930 1.1e-07 60.5 44 56.8
Nitab4.5_0002750g0110 Nicotiana tabacum HOM05D001117 ORTHO05D000930 1.1e-07 60.5 66 42.4
Rhsim06G0154100 Rhododendron simsii HOM05D001117 ORTHO05D000930 1.1e-07 60.5 44 56.8
SGA_v2.0_scaffold114G31995 Striga asiatica HOM05D001117 ORTHO05D000930 1.1e-07 60.5 43 60.5
Ah.09g236270 Amaranthus hybridus HOM05D001117 ORTHO05D000930 1.4e-07 60.1 44 59.1
Ah.09g236520 Amaranthus hybridus HOM05D001117 ORTHO05D000930 1.4e-07 60.1 44 59.1
CiPaw.09G156200 Carya illinoinensis HOM05D001117 ORTHO05D000930 1.4e-07 60.1 61 45.9
Duzib192G0536 Durio zibethinus HOM05D001117 ORTHO05D000930 1.4e-07 60.1 48 54.2
Lj3g0026940 Lotus japonicus HOM05D001117 ORTHO05D000930 1.4e-07 60.1 60 45.0
Thecc.06G202800 Theobroma cacao HOM05D001117 ORTHO05D000930 1.4e-07 60.1 48 54.2
TWI63G0822 Tripterygium wilfordii HOM05D001117 ORTHO05D000930 1.4e-07 60.1 69 46.4
TAR624G0032 Trochodendron aralioides HOM05D001117 ORTHO05D000930 1.4e-07 60.1 70 44.3
COL.COLO4_09503 Corchorus olitorius HOM05D001117 ORTHO05D000930 1.9e-07 59.7 54 50.0
Dinv08363 Davidia involucrata HOM05D000893 ORTHO05D000930 1.9e-07 59.7 55 47.3
Lj8A119T45 Lonicera japonica HOM05D001117 ORTHO05D000930 1.9e-07 59.7 44 54.5
Lj6g0006365 Lotus japonicus HOM05D001117 ORTHO05D000930 1.9e-07 59.7 56 42.9
Nitab4.5_0000631g0020 Nicotiana tabacum HOM05D001117 ORTHO05D000930 1.9e-07 59.7 66 42.4
Nitab4.5_0000649g0230 Nicotiana tabacum HOM05D001117 ORTHO05D000930 1.9e-07 59.7 58 50.0
Oeu034260.1 Olea europaea HOM05D001117 ORTHO05D000930 1.9e-07 59.7 44 56.8
QL05p080483 Quercus lobata HOM05D001117 ORTHO05D000930 1.9e-07 59.7 51 52.9
CAN.G640.14 Capsicum annuum HOM05D001117 ORTHO05D000930 2.4e-07 59.3 44 54.5
Haze_09554 Corylus avellana HOM05D001117 ORTHO05D000930 2.4e-07 59.3 70 41.4
Duzib235G1374 Durio zibethinus HOM05D001117 ORTHO05D000930 2.4e-07 59.3 71 45.1
FAN09G0344 Fragaria x ananassa HOM05D001117 ORTHO05D000930 2.4e-07 59.3 59 47.5
Gohir.A04G024900 Gossypium hirsutum HOM05D001117 ORTHO05D000930 2.4e-07 59.3 50 54.0
Gohir.D05G362500 Gossypium hirsutum HOM05D001117 ORTHO05D000930 2.4e-07 59.3 50 54.0
Gorai.009G430000 Gossypium raimondii HOM05D001117 ORTHO05D000930 2.4e-07 59.3 50 54.0
Manes.15G081202 Manihot esculenta HOM05D001117 ORTHO05D000930 2.4e-07 59.3 80 43.8
MBI02_g03607_MAGBIO Magnolia biondii HOM05D001117 ORTHO05D000930 3.2e-07 58.9 47 55.3
Sopen10g002670 Solanum pennellii HOM05D001117 ORTHO05D000930 3.2e-07 58.9 44 59.1
Cpa.g.c31349 Carica papaya HOM05D001117 ORTHO05D000930 5.4e-07 58.2 53 54.7
FAN05G3136 Fragaria x ananassa HOM05D001117 ORTHO05D000930 5.4e-07 58.2 59 44.1
FAN14G1056 Fragaria x ananassa HOM05D001117 ORTHO05D000930 5.4e-07 58.2 59 45.8
MSTRG.15188 Avicennia marina HOM05D001117 ORTHO05D000930 7.1e-07 57.8 77 39.0
Duzib160G0287 Durio zibethinus HOM05D001117 ORTHO05D000930 7.1e-07 57.8 48 52.1
CSS0042826 Camellia sinensis var. sinensis HOM05D001117 ORTHO05D000930 9.2e-07 57.4 44 56.8
Cc05_g12830 Coffea canephora HOM05D001117 ORTHO05D000930 9.2e-07 57.4 44 54.5
Lalb_Chr14g0366501 Lupinus albus HOM05D001117 ORTHO05D000930 9.2e-07 57.4 75 42.7
Manes.16G019163 Manihot esculenta HOM05D001117 ORTHO05D000930 9.2e-07 57.4 66 42.4
Nn1g03814 Nelumbo nucifera HOM05D001117 ORTHO05D000930 9.2e-07 57.4 49 51.0
Potri.004G027100 Populus trichocarpa HOM05D001117 ORTHO05D000930 9.2e-07 57.4 66 42.4
RcHm_v2.0_Chr2g0161131 Rosa chinensis HOM05D001117 ORTHO05D000930 9.2e-07 57.4 49 49.0
Sed0014421 Sechium edule HOM05D001117 ORTHO05D000930 9.2e-07 57.4 44 56.8
Sopen02g024230 Solanum pennellii HOM05D001117 ORTHO05D000930 9.2e-07 57.4 55 52.7
unitig_37.g12582 Utricularia gibba HOM05D001117 ORTHO05D000930 9.2e-07 57.4 47 48.9
Actinidia12477 Actinidia chinensis HOM05D001117 ORTHO05D000930 1.2e-06 57.0 44 54.5
CSS0048976 Camellia sinensis var. sinensis HOM05D001117 ORTHO05D000930 1.2e-06 57.0 78 38.5
Eucgr.E03673 Eucalyptus grandis HOM05D001117 ORTHO05D000930 1.2e-06 57.0 43 58.1
Thhalv10014573m.g Eutrema salsugineum HOM05D001117 ORTHO05D000930 1.2e-06 57.0 49 55.1
FvH4_6g44270 Fragaria vesca HOM05D001117 ORTHO05D000930 1.2e-06 57.0 59 45.8
Gohir.A01G070100 Gossypium hirsutum HOM05D001117 ORTHO05D000930 1.2e-06 57.0 49 51.0
Gorai.002G077700 Gossypium raimondii HOM05D001117 ORTHO05D000930 1.2e-06 57.0 49 51.0
Nitab4.5_0004625g0020 Nicotiana tabacum HOM05D001117 ORTHO05D000930 1.2e-06 57.0 44 52.3
Sc12g0002580 Simmondsia chinensis HOM05D001117 ORTHO05D000930 1.2e-06 57.0 70 41.4
Solyc12g005660.2 Solanum lycopersicum HOM05D001117 ORTHO05D000930 1.2e-06 57.0 67 43.3
PGSC0003DMG400013753 Solanum tuberosum HOM05D001117 ORTHO05D000930 1.2e-06 57.0 44 50.0
THA.LOC104809280 Tarenaya hassleriana HOM05D001117 ORTHO05D000930 1.2e-06 57.0 49 55.1
CAN.G1110.35 Capsicum annuum HOM05D001117 ORTHO05D000930 1.6e-06 56.6 43 53.5
ClCG05G015130 Citrullus lanatus HOM05D001117 ORTHO05D000930 1.6e-06 56.6 44 54.5
RcHm_v2.0_Chr5g0005681 Rosa chinensis HOM05D001117 ORTHO05D000930 1.6e-06 56.6 49 51.0
Solyc02g079430.4 Solanum lycopersicum HOM05D001117 ORTHO05D000930 1.6e-06 56.6 61 47.5
PGSC0003DMG400022345 Solanum tuberosum HOM05D001117 ORTHO05D000930 1.6e-06 56.6 60 51.7
Eucgr.F01063 Eucalyptus grandis HOM05D001117 ORTHO05D000930 2.1e-06 56.2 44 54.5
FAN02G4522 Fragaria x ananassa HOM05D001117 ORTHO05D000930 2.1e-06 56.2 59 45.8
Medtr2g089310 Medicago truncatula HOM05D001117 ORTHO05D000930 2.1e-06 56.2 45 53.3
Oeu045546.1 Olea europaea HOM05D001117 ORTHO05D000930 2.1e-06 56.2 44 54.5
Sabra04G0015400 Salix brachista HOM05D001117 ORTHO05D000930 2.1e-06 56.2 57 43.9
arahy.Tifrunner.gnm1.ann1.PDLP37 Arachis hypogaea HOM05D001117 ORTHO05D000930 2.7e-06 55.8 44 54.5
arahy.Tifrunner.gnm1.ann1.UHV0SM Arachis hypogaea HOM05D001117 ORTHO05D000930 2.7e-06 55.8 44 54.5
CAN.G424.41 Capsicum annuum HOM05D001117 ORTHO05D000930 2.7e-06 55.8 49 51.0
CARHR267730 Cardamine hirsuta HOM05D001117 ORTHO05D000930 2.7e-06 55.8 49 53.1
Duzib268G1363 Durio zibethinus HOM05D001117 ORTHO05D000930 2.7e-06 55.8 49 51.0
Migut.M00372 Erythranthe guttata HOM05D001117 ORTHO05D000930 2.7e-06 55.8 45 53.3
Gohir.A12G135650 Gossypium hirsutum HOM05D001117 ORTHO05D000930 2.7e-06 55.8 68 42.6
Phvul.011G149800 Phaseolus vulgaris HOM05D001117 ORTHO05D000930 2.7e-06 55.8 75 42.7
Prupe.3G226900 Prunus persica HOM05D001117 ORTHO05D000930 2.7e-06 55.8 47 51.1
Sed0008702 Sechium edule HOM05D001117 ORTHO05D000930 2.7e-06 55.8 75 41.3
Sc21g0002060 Simmondsia chinensis HOM05D001117 ORTHO05D000930 2.7e-06 55.8 52 44.2
Ciclev10016798m.g Citrus clementina HOM05D001117 ORTHO05D000930 3.5e-06 55.5 70 41.4
MELO3C007337.2 Cucumis melo HOM05D001117 ORTHO05D000930 3.5e-06 55.5 52 48.1
Nn1g06843 Nelumbo nucifera HOM05D001117 ORTHO05D000930 3.5e-06 55.5 49 49.0
Nitab4.5_0000207g0320 Nicotiana tabacum HOM05D001117 ORTHO05D000930 3.5e-06 55.5 43 55.8
Atru.chr6.3098 Acer truncatum HOM05D001117 ORTHO05D000930 4.6e-06 55.1 44 52.3
Actinidia09934 Actinidia chinensis HOM05D001117 ORTHO05D000930 4.6e-06 55.1 60 43.3
ClCG01G022380 Citrullus lanatus HOM05D001117 ORTHO05D000930 4.6e-06 55.1 51 45.1
FvH4_3g21230 Fragaria vesca HOM05D001117 ORTHO05D000930 4.6e-06 55.1 47 53.2
FAN11G2630 Fragaria x ananassa HOM05D001117 ORTHO05D000930 4.6e-06 55.1 47 53.2
FAN16G2363 Fragaria x ananassa HOM05D001117 ORTHO05D000930 4.6e-06 55.1 47 53.2
FAN21G1510 Fragaria x ananassa HOM05D001117 ORTHO05D000930 4.6e-06 55.1 47 53.2
FAN25G1248 Fragaria x ananassa HOM05D001117 ORTHO05D000930 4.6e-06 55.1 47 53.2
Manes.03G117900 Manihot esculenta HOM05D001117 ORTHO05D000930 4.6e-06 55.1 58 44.8
Manes.17G032600 Manihot esculenta HOM05D001117 ORTHO05D000930 4.6e-06 55.1 67 43.3
PSO541G1682 Papaver somniferum HOM05D001117 ORTHO05D000930 4.6e-06 55.1 52 44.2
Psat5g267200 Pisum sativum HOM05D001117 ORTHO05D000930 4.6e-06 55.1 55 41.8
TWI18G1418 Tripterygium wilfordii HOM05D001117 ORTHO05D000930 4.6e-06 55.1 68 44.1
unitig_46.g18330 Utricularia gibba HOM05D001117 ORTHO05D000930 4.6e-06 55.1 49 46.9
Actinidia39294 Actinidia chinensis HOM05D001117 ORTHO05D000930 6.0e-06 54.7 70 42.9
BcaC03g14311 Brassica carinata HOM05D001117 ORTHO05D000930 6.0e-06 54.7 48 54.2
BcaC04g20335 Brassica carinata HOM05D001117 ORTHO05D000930 6.0e-06 54.7 49 51.0
C09p44790 Brassica napus HOM05D001117 ORTHO05D000930 6.0e-06 54.7 49 51.0
BolC9t57353H Brassica oleracea HOM05D001117 ORTHO05D000930 6.0e-06 54.7 49 51.0
Lsat_1_v5_gn_4_69761 Lactuca sativa HOM05D001117 ORTHO05D000930 6.0e-06 54.7 45 55.6
Oeu055693.1 Olea europaea HOM05D001117 ORTHO05D000930 6.0e-06 54.7 69 37.7
PSO675G8739 Papaver somniferum HOM05D001117 ORTHO05D000930 6.0e-06 54.7 52 44.2
Sopen07g026690 Solanum pennellii HOM05D001117 ORTHO05D000930 6.0e-06 54.7 44 50.0
THA.LOC104799898 Tarenaya hassleriana HOM05D001117 ORTHO05D000930 6.0e-06 54.7 54 50.0
Aa31LG5G10190 Aethionema arabicum HOM05D001117 ORTHO05D000930 7.8e-06 54.3 49 53.1
CANSAT11G1364 Cannabis sativa HOM05D001117 ORTHO05D000930 7.8e-06 54.3 58 46.6
MELO3C018174.2 Cucumis melo HOM05D001117 ORTHO05D000930 7.8e-06 54.3 69 40.6
CsaV3_3G044220 Cucumis sativus L. HOM05D001117 ORTHO05D000930 7.8e-06 54.3 79 40.5
Nitab4.5_0001320g0010 Nicotiana tabacum HOM05D001117 ORTHO05D000930 7.8e-06 54.3 44 54.5
Sopen12g001590 Solanum pennellii HOM05D001117 ORTHO05D000930 7.8e-06 54.3 67 40.3


User provided reference genes

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