Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 1.9e-93 345.9 186 100.0
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 1.7e-41 173.3 183 48.6
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 5.0e-41 171.8 183 50.8
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 3.2e-40 169.1 194 49.0
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 3.0e-38 162.5 176 50.0
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.2e-34 150.6 188 45.2
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 5.5e-32 141.7 192 44.3
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 9.4e-32 141.0 190 40.0
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.7e-31 138.7 186 41.4
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 8.0e-31 137.9 188 41.5
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 1.8e-30 136.7 185 43.2
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 6.8e-30 134.8 186 40.9
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 7.5e-29 131.3 185 41.1
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 2.8e-28 129.4 190 41.6
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 4.8e-28 128.6 179 46.9
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 6.3e-28 128.3 189 40.2
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 8.3e-28 127.9 190 40.0
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 1.4e-27 127.1 178 43.3
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 7.0e-27 124.8 179 42.5
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 7.0e-27 124.8 182 42.9
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 9.1e-27 124.4 180 43.9
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 4.5e-26 122.1 180 43.9
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 1.5e-24 117.1 195 40.5
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.3e-24 115.9 188 38.8
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 1.2e-23 114.0 201 38.8
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 1.6e-23 113.6 195 35.9
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 1.6e-23 113.6 178 42.7
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 1.6e-23 113.6 189 35.4
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 2.8e-23 112.8 189 39.2
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.8e-23 112.8 180 38.9
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 4.7e-23 112.1 180 38.9
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 6.1e-23 111.7 181 40.3
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 8.0e-23 111.3 180 38.9
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 1.0e-22 110.9 188 36.2
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 1.0e-22 110.9 185 41.6
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 1.4e-22 110.5 186 37.6
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 4.0e-22 109.0 183 39.9
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 6.8e-22 108.2 173 35.3
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 8.9e-22 107.8 186 40.9
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 8.9e-22 107.8 179 38.0
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 8.9e-22 107.8 184 39.1
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.5e-21 107.1 191 38.7
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.5e-21 107.1 187 39.6
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 2.0e-21 106.7 185 41.1
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 3.4e-21 105.9 194 36.1
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 3.4e-21 105.9 192 36.5
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 5.7e-21 105.1 188 36.2
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 5.7e-21 105.1 184 39.1
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 5.7e-21 105.1 193 36.8
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 7.5e-21 104.8 181 38.1
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 7.5e-21 104.8 175 36.0
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 9.8e-21 104.4 194 37.1
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.3e-20 104.0 183 37.2
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.7e-20 103.6 185 35.7
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 2.2e-20 103.2 181 38.7
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 2.8e-20 102.8 185 36.8
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 3.7e-20 102.4 178 38.2
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 4.9e-20 102.1 194 37.1
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 4.9e-20 102.1 192 37.0
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.1e-19 100.9 181 36.5
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 1.1e-19 100.9 181 41.4
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 1.1e-19 100.9 182 35.7
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 1.4e-19 100.5 188 37.8
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 1.8e-19 100.1 191 35.1
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.8e-19 100.1 183 38.3
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.4e-19 99.8 182 36.3
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 3.1e-19 99.4 184 38.6
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 4.1e-19 99.0 181 39.8
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 4.1e-19 99.0 186 33.3
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 5.4e-19 98.6 178 37.1
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 5.4e-19 98.6 186 35.5
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 7.0e-19 98.2 188 38.3
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 1.2e-18 97.4 189 39.2
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.2e-18 97.4 185 36.8
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.6e-18 97.1 183 34.4
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 2.0e-18 96.7 181 37.6
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 2.0e-18 96.7 178 38.2
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 2.7e-18 96.3 180 37.2
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.7e-18 96.3 182 34.6
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 2.7e-18 96.3 189 31.2
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 2.7e-18 96.3 188 37.8
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.0e-17 94.4 180 36.7
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.0e-17 94.4 187 37.4
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.3e-17 94.0 175 38.3
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 1.7e-17 93.6 184 32.6
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 2.9e-17 92.8 177 36.2
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 3.9e-17 92.4 192 35.9
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 5.0e-17 92.0 183 36.1
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 8.6e-17 91.3 175 31.4
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.1e-16 90.9 193 37.3
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 1.9e-16 90.1 179 35.2
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 3.3e-16 89.4 193 41.5
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 4.3e-16 89.0 179 40.8
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 4.3e-16 89.0 184 34.8
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 4.3e-16 89.0 197 32.0
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 9.5e-16 87.8 181 32.6
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 4.7e-15 85.5 181 39.2
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 6.1e-15 85.1 193 37.8
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 6.1e-15 85.1 175 31.4
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 8.0e-15 84.7 200 32.5
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.0e-14 84.3 196 29.6
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 1.0e-14 84.3 202 30.2
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 6.8e-14 81.6 193 36.8
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 8.9e-14 81.3 187 38.0
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 8.9e-14 81.3 194 38.1
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.2e-13 80.9 135 39.3
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.2e-13 80.9 190 38.9
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.2e-13 80.9 202 29.7
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 1.2e-13 80.9 192 37.5
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 2.0e-13 80.1 187 31.0
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 3.4e-13 79.3 190 38.4
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 3.4e-13 79.3 171 36.3
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 4.4e-13 79.0 137 38.0
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 7.5e-13 78.2 193 36.8
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 7.5e-13 78.2 191 34.0
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 7.5e-13 78.2 174 35.6
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 1.3e-12 77.4 238 25.6
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.7e-12 77.0 180 35.0
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 6.4e-12 75.1 128 37.5
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 8.3e-12 74.7 181 30.4
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.1e-11 74.3 189 37.0
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 1.1e-11 74.3 191 34.0
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.9e-11 73.6 194 34.5
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 1.9e-11 73.6 194 33.0
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.4e-11 73.2 192 35.4
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 3.2e-11 72.8 197 35.0
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 4.1e-11 72.4 190 36.3
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 5.4e-11 72.0 194 32.5
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 7.0e-11 71.6 197 35.0
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 7.0e-11 71.6 190 35.8
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 2.7e-10 69.7 189 34.4
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 6.0e-10 68.6 191 34.6
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 6.0e-10 68.6 191 34.6
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 1.0e-09 67.8 157 30.6
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 1.0e-09 67.8 186 32.3
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.3e-09 67.4 191 32.5
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 1.7e-09 67.0 197 34.5
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 2.3e-09 66.6 199 34.2
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 3.9e-09 65.9 199 33.7
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 5.0e-09 65.5 187 29.4
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 1.1e-08 64.3 202 34.2
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 1.9e-08 63.5 191 34.6
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 2.5e-08 63.2 191 34.6
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 1.6e-07 60.5 161 28.0
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 1.6e-07 60.5 173 35.3
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 2.1e-07 60.1 85 40.0
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 3.6e-07 59.3 112 34.8
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 4.7e-07 58.9 153 33.3
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 6.2e-07 58.5 156 30.1
BraA03t15471Z Brassica rapa HOM05D003097 ORTHO05D003437 6.2e-07 58.5 118 44.1
BcaNung03021 Brassica carinata HOM05D003097 ORTHO05D003437 8.0e-07 58.2 154 39.0
C07p61510 Brassica napus HOM05D003097 ORTHO05D003437 8.0e-07 58.2 154 39.0
BolC7t46575H Brassica oleracea HOM05D003097 ORTHO05D003437 8.0e-07 58.2 154 39.0
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 1.8e-06 57.0 86 40.7
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 3.1e-06 56.2 86 36.0
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 3.1e-06 56.2 53 49.1
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 4.0e-06 55.8 53 49.1
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 5.2e-06 55.5 60 43.3
Cfa005183 Carpinus fangiana HOM05D003097 ORTHO05D003437 5.2e-06 55.5 50 50.0
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 6.8e-06 55.1 59 42.4
Glyma.07G171600 Glycine max HOM05D003097 ORTHO05D003437 6.8e-06 55.1 171 33.3
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 8.9e-06 54.7 52 48.1


User provided reference genes

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