Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021024.1 Olea europaea HOM05D006401 ORTHO05D007864 3.4e-45 184.5 84 100.0
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.2e-18 96.3 80 58.8
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 7.8e-18 93.6 57 68.4
Solyc07g017260.2 Solanum lycopersicum HOM05D006401 ORTHO05D007864 5.1e-17 90.9 80 52.5
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 1.9e-16 89.0 80 51.2
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 9.5e-16 86.7 55 74.5
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 1.6e-15 85.9 81 54.3
PGSC0003DMG401009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 1.6e-15 85.9 80 50.0
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 4.7e-15 84.3 60 65.0
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 8.1e-15 83.6 60 61.7
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 1.1e-14 83.2 58 62.1
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 1.4e-14 82.8 65 55.4
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 1.4e-14 82.8 58 60.3
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 2.4e-14 82.0 57 63.2
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 3.1e-14 81.6 80 56.2
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 4.0e-14 81.3 63 57.1
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 5.2e-14 80.9 60 60.0
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 8.9e-14 80.1 85 49.4
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 8.9e-14 80.1 55 65.5
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 1.2e-13 79.7 56 62.5
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 1.5e-13 79.3 71 52.1
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 2.0e-13 79.0 57 61.4
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 2.0e-13 79.0 65 55.4
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 2.6e-13 78.6 81 51.9
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 3.4e-13 78.2 65 53.8
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 3.4e-13 78.2 65 53.8
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 4.4e-13 77.8 55 60.0
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 5.8e-13 77.4 70 51.4
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 7.6e-13 77.0 51 62.7
Nn8g41111 Nelumbo nucifera HOM05D006401 ORTHO05D007864 7.6e-13 77.0 57 61.4
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 7.6e-13 77.0 57 61.4
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 7.6e-13 77.0 48 66.7
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 1.7e-12 75.9 54 61.1
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 2.2e-12 75.5 60 53.3
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 2.2e-12 75.5 56 55.4
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 2.9e-12 75.1 54 57.4
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 2.9e-12 75.1 57 57.9
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 3.8e-12 74.7 55 58.2
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 3.8e-12 74.7 49 67.3
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 4.9e-12 74.3 53 58.5
Os06g0663100 Oryza sativa ssp. japonica HOM05D006401 ORTHO05D007864 4.9e-12 74.3 53 58.5
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 6.4e-12 73.9 56 55.4
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 8.4e-12 73.6 55 54.5
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 8.4e-12 73.6 53 60.4
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.1e-11 73.2 55 52.7
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 1.1e-11 73.2 81 50.6
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 1.4e-11 72.8 51 60.8
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 1.4e-11 72.8 54 55.6
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.9e-11 72.4 56 58.9
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 1.9e-11 72.4 56 58.9
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 2.4e-11 72.0 50 60.0
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 3.2e-11 71.6 50 60.0
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 4.1e-11 71.2 54 55.6
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 4.1e-11 71.2 48 66.7
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 4.1e-11 71.2 48 66.7
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 7.1e-11 70.5 59 52.5
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 7.1e-11 70.5 60 51.7
HPP92_019927 Vanilla planifolia HOM05D006401 ORTHO05D007864 7.1e-11 70.5 62 51.6
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 9.2e-11 70.1 54 53.7
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 1.2e-10 69.7 48 60.4
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 1.6e-10 69.3 57 52.6
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 2.1e-10 68.9 56 57.1
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 3.5e-10 68.2 62 46.8
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 7.8e-10 67.0 56 55.4
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 1.0e-09 66.6 52 51.9
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 1.0e-09 66.6 50 54.0
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 1.0e-09 66.6 57 50.9
Eucgr.C02172 Eucalyptus grandis HOM05D006401 ORTHO05D007864 1.7e-09 65.9 76 46.1
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 3.0e-09 65.1 50 56.0
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 3.0e-09 65.1 50 56.0
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 5.1e-09 64.3 48 58.3
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 5.1e-09 64.3 48 58.3
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 6.6e-09 63.9 47 55.3
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.9e-08 62.4 50 50.0
SEGI_17053 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.9e-08 62.4 56 48.2
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 2.5e-08 62.0 47 55.3
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 3.3e-08 61.6 51 51.0
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 5.6e-08 60.8 47 55.3
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 7.3e-08 60.5 50 52.0
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 7.3e-08 60.5 57 50.9
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 9.6e-08 60.1 50 52.0
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 9.6e-08 60.1 58 50.0
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 2.1e-07 58.9 50 52.0
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 2.8e-07 58.5 50 50.0
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 3.6e-07 58.2 50 50.0
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 6.2e-07 57.4 50 50.0
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 6.2e-07 57.4 50 50.0
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 6.2e-07 57.4 47 51.1


User provided reference genes

Program Settings