Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 3.0e-212 741.9 459 100.0
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 7.8e-120 434.9 546 59.0
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 9.3e-97 358.2 552 49.8
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 9.3e-97 358.2 544 50.9
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 2.5e-94 350.1 558 51.3
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 5.6e-94 349.0 564 48.8
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.1e-93 347.1 558 48.7
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 6.2e-93 345.5 544 55.7
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.1e-92 344.7 561 49.4
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 5.3e-92 342.4 601 50.2
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 2.0e-91 340.5 550 54.9
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.7e-90 337.4 554 49.3
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 4.9e-90 335.9 550 54.9
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 4.9e-90 335.9 551 46.3
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 5.1e-87 325.9 291 68.7
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 8.7e-87 325.1 501 46.7
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.3e-85 321.2 514 46.5
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.0e-84 316.2 545 46.2
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 5.3e-84 315.8 505 46.3
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 5.3e-84 315.8 580 44.7
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 3.8e-82 309.7 501 50.5
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 4.2e-81 306.2 537 45.4
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.2e-81 306.2 553 44.8
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.2e-80 304.7 556 43.2
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 1.6e-80 304.3 568 45.4
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.6e-80 302.8 555 48.6
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 6.0e-80 302.4 527 49.5
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 1.3e-79 301.2 550 47.5
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 5.1e-79 299.3 507 43.6
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 5.1e-79 299.3 503 48.5
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 6.7e-79 298.9 586 43.3
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 1.6e-77 294.3 541 48.2
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.2e-77 293.9 542 43.9
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 4.8e-77 292.7 552 45.5
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 4.8e-77 292.7 555 47.2
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 4.8e-77 292.7 575 43.7
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 8.2e-77 292.0 594 45.3
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 8.2e-77 292.0 557 49.0
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.1e-76 291.6 553 47.4
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.8e-76 290.8 524 44.5
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 3.1e-76 290.0 544 43.8
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 3.1e-76 290.0 538 44.1
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 6.9e-76 288.9 540 43.7
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 9.0e-76 288.5 556 46.0
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 2.2e-74 283.9 532 45.7
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.4e-73 281.2 553 45.8
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 1.4e-73 281.2 547 44.8
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 3.2e-73 280.0 553 40.5
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 4.2e-73 279.6 558 45.3
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 7.2e-73 278.9 536 50.4
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 9.3e-73 278.5 564 44.3
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 9.3e-73 278.5 318 54.7
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 2.7e-72 276.9 564 46.3
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 1.0e-71 275.0 560 45.2
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 1.3e-71 274.6 528 45.8
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.8e-71 274.2 541 46.4
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 5.1e-71 272.7 522 43.5
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 6.7e-71 272.3 513 42.1
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 6.7e-71 272.3 571 45.9
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.1e-70 271.6 257 63.8
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.1e-70 271.6 261 61.3
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.1e-70 271.6 570 44.2
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 3.3e-70 270.0 584 43.8
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 4.3e-70 269.6 504 43.3
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 1.7e-69 267.7 542 41.1
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.7e-69 267.7 571 42.7
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 2.2e-69 267.3 559 41.9
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.2e-69 267.3 557 42.7
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.2e-69 267.3 563 38.4
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 4.8e-69 266.2 557 41.5
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 6.3e-69 265.8 533 43.0
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 1.1e-68 265.0 530 43.6
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.8e-68 264.2 304 54.6
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 4.1e-68 263.1 528 42.4
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 6.9e-68 262.3 558 39.8
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 9.1e-68 261.9 540 39.6
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 2.6e-67 260.4 534 43.3
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.0e-66 258.5 550 44.2
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.3e-66 258.1 551 44.8
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.7e-66 257.7 533 41.7
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 3.8e-66 256.5 534 44.4
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 3.8e-66 256.5 544 41.2
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 5.0e-66 256.1 552 45.3
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 6.5e-66 255.8 468 41.5
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 6.5e-66 255.8 479 44.3
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-65 255.0 543 40.3
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.1e-65 255.0 562 40.0
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 1.4e-65 254.6 525 41.3
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 2.5e-65 253.8 526 40.9
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 2.5e-65 253.8 507 49.1
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 9.4e-65 251.9 509 45.6
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.7e-64 250.4 628 37.6
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.6e-64 250.0 300 53.0
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 4.7e-64 249.6 539 40.1
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 6.1e-64 249.2 525 41.0
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 7.9e-64 248.8 527 40.2
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-63 248.4 535 39.8
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.4e-63 248.1 300 52.3
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.1e-63 246.1 514 44.0
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.8e-63 245.4 530 41.3
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.5e-62 244.6 532 41.5
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.6e-62 243.8 529 42.3
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 3.3e-62 243.4 523 40.0
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.2e-61 240.7 555 41.4
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 4.8e-61 239.6 549 42.8
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 4.1e-60 236.5 446 40.8
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 2.1e-56 224.2 278 53.2
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.5e-54 218.0 249 51.0
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.0e-54 217.6 245 52.2
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 3.3e-54 216.9 291 50.5
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 8.2e-53 212.2 567 38.3
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 4.1e-52 209.9 475 39.6
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 3.0e-47 193.7 196 57.1
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.5e-46 191.4 243 46.9
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 3.3e-46 190.3 331 45.3
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 2.8e-45 187.2 485 35.1
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 7.0e-44 182.6 299 42.8
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.0e-42 178.7 585 38.1
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 2.5e-41 174.1 325 38.8
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.2e-40 171.8 146 69.2
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.2e-40 171.8 154 65.6
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 2.2e-37 161.0 227 47.6
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 2.2e-37 161.0 316 49.7
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.7e-34 151.4 244 42.6
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 2.9e-34 150.6 226 45.6
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.2e-32 145.2 139 61.2
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 4.0e-31 140.2 253 38.3
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-25 122.1 147 49.0
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 2.5e-25 120.9 188 43.1
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 2.5e-25 120.9 188 43.1
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.3e-25 120.2 95 70.5
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 4.9e-21 106.7 258 31.8
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.4e-21 106.3 119 51.3
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.5e-17 94.4 66 72.7
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 4.0e-15 87.0 152 41.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 9.8e-14 82.4 58 77.6
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 2.2e-13 81.3 62 67.7
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 2.4e-12 77.8 51 80.4
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 1.1e-09 68.9 44 81.8
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.9e-09 68.2 69 55.1
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.3e-09 67.4 76 50.0
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 9.5e-09 65.9 247 27.1
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.4e-06 57.4 37 70.3
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 9.9e-06 55.8 50 62.0


User provided reference genes

Program Settings