Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020378.1 Olea europaea HOM05D003690 ORTHO05D004920 7.9e-107 390.6 216 100.0
SGA_v2.0_scaffold1G00720 Striga asiatica HOM05D003690 ORTHO05D004920 1.4e-50 203.8 191 65.4
Haze_24784 Corylus avellana HOM05D003690 ORTHO05D004920 1.7e-48 196.8 156 75.6
MSTRG.18384 Avicennia marina HOM05D003690 ORTHO05D004920 6.4e-48 194.9 193 66.8
COL.COLO4_09004 Corchorus olitorius HOM05D003690 ORTHO05D004920 2.4e-47 193.0 149 77.2
Solyc09g061430.3 Solanum lycopersicum HOM05D003690 ORTHO05D004920 2.4e-47 193.0 157 72.6
Sopen09g024250 Solanum pennellii HOM05D003690 ORTHO05D004920 2.4e-47 193.0 157 72.6
SalBow2G1746 Salvia bowleyana HOM05D003690 ORTHO05D004920 4.1e-47 192.2 149 76.5
PGSC0003DMG400028012 Solanum tuberosum HOM05D003690 ORTHO05D004920 4.1e-47 192.2 156 74.4
CSS0014117 Camellia sinensis var. sinensis HOM05D003690 ORTHO05D004920 5.4e-47 191.8 158 73.4
CSS0044814 Camellia sinensis var. sinensis HOM05D003690 ORTHO05D004920 5.4e-47 191.8 158 73.4
Nitab4.5_0002085g0010 Nicotiana tabacum HOM05D003690 ORTHO05D004920 5.4e-47 191.8 194 63.9
QL07p005142 Quercus lobata HOM05D003690 ORTHO05D004920 7.1e-47 191.4 152 75.7
Thhalv10020356m.g Eutrema salsugineum HOM05D003690 ORTHO05D004920 1.6e-46 190.3 151 73.5
Thecc.01G227500 Theobroma cacao HOM05D003690 ORTHO05D004920 1.6e-46 190.3 149 73.8
Duzib138G1284 Durio zibethinus HOM05D003690 ORTHO05D004920 2.1e-46 189.9 149 75.2
Cc01_g17200 Coffea canephora HOM05D003690 ORTHO05D004920 2.7e-46 189.5 194 65.5
CsaV3_3G006620 Cucumis sativus L. HOM05D003690 ORTHO05D004920 6.0e-46 188.3 150 76.0
Thhalv10002456m.g Eutrema salsugineum HOM05D003690 ORTHO05D004920 1.0e-45 187.6 150 73.3
Gohir.D07G162600 Gossypium hirsutum HOM05D003690 ORTHO05D004920 1.0e-45 187.6 149 75.2
Gorai.001G186200 Gossypium raimondii HOM05D003690 ORTHO05D004920 1.0e-45 187.6 191 63.9
Sc01g0007050 Simmondsia chinensis HOM05D003690 ORTHO05D004920 1.0e-45 187.6 151 73.5
GSVIVG01028584001 Vitis vinifera HOM05D003690 ORTHO05D004920 1.0e-45 187.6 157 73.2
ClCG10G007380 Citrullus lanatus HOM05D003690 ORTHO05D004920 1.3e-45 187.2 150 77.3
Nitab4.5_0000866g0120 Nicotiana tabacum HOM05D003690 ORTHO05D004920 1.3e-45 187.2 158 71.5
Nitab4.5_0003790g0010 Nicotiana tabacum HOM05D003690 ORTHO05D004920 1.3e-45 187.2 158 71.5
Sp3g05990 Schrenkiella parvula HOM05D003690 ORTHO05D004920 1.3e-45 187.2 151 72.2
CiPaw.04G105900 Carya illinoinensis HOM05D003690 ORTHO05D004920 1.7e-45 186.8 198 61.1
C03p42620 Brassica napus HOM05D003690 ORTHO05D004920 2.3e-45 186.4 149 73.2
Eucgr.K03607 Eucalyptus grandis HOM05D003690 ORTHO05D004920 2.3e-45 186.4 151 74.8
THA.LOC104820116 Tarenaya hassleriana HOM05D003690 ORTHO05D004920 2.3e-45 186.4 150 74.0
PGSC0003DMG400020159 Solanum tuberosum HOM05D003690 ORTHO05D004920 3.0e-45 186.0 156 72.4
unitig_8.g3755 Utricularia gibba HOM05D003690 ORTHO05D004920 3.0e-45 186.0 188 62.8
A03p35040 Brassica napus HOM05D003690 ORTHO05D004920 3.9e-45 185.7 149 72.5
QL12p004452 Quercus lobata HOM05D003690 ORTHO05D004920 3.9e-45 185.7 150 77.3
Sc09g0009180 Simmondsia chinensis HOM05D003690 ORTHO05D004920 3.9e-45 185.7 151 73.5
arahy.Tifrunner.gnm1.ann1.27DWCJ Arachis hypogaea HOM05D003690 ORTHO05D004920 5.1e-45 185.3 149 72.5
CANSAT01G2208 Cannabis sativa HOM05D003690 ORTHO05D004920 6.6e-45 184.9 151 72.2
Dinv04660 Davidia involucrata HOM05D003690 ORTHO05D004920 6.6e-45 184.9 153 73.9
Duzib133G1322 Durio zibethinus HOM05D003690 ORTHO05D004920 6.6e-45 184.9 191 62.8
BolC3t16532H Brassica oleracea HOM05D003690 ORTHO05D004920 8.6e-45 184.5 149 72.5
arahy.Tifrunner.gnm1.ann1.0Y3V4L Arachis hypogaea HOM05D003690 ORTHO05D004920 1.1e-44 184.1 149 73.2
Sopen06g034900 Solanum pennellii HOM05D003690 ORTHO05D004920 1.1e-44 184.1 156 71.2
Gohir.A07G156300 Gossypium hirsutum HOM05D003690 ORTHO05D004920 1.5e-44 183.7 149 74.5
Aqoxy5G01520 Aquilegia oxysepala HOM05D003690 ORTHO05D004920 1.9e-44 183.3 191 63.4
PGR044G2123 Punica granatum HOM05D003690 ORTHO05D004920 1.9e-44 183.3 149 72.5
BcaC09g47936 Brassica carinata HOM05D003690 ORTHO05D004920 2.5e-44 183.0 149 71.8
FAN16G3655 Fragaria x ananassa HOM05D003690 ORTHO05D004920 2.5e-44 183.0 149 75.8
FAN21G1197 Fragaria x ananassa HOM05D003690 ORTHO05D004920 2.5e-44 183.0 149 75.8
Nn3g19439 Nelumbo nucifera HOM05D003690 ORTHO05D004920 2.5e-44 183.0 158 72.2
Nn3g19937 Nelumbo nucifera HOM05D003690 ORTHO05D004920 3.3e-44 182.6 158 72.2
FvH4_3g29200 Fragaria vesca HOM05D003690 ORTHO05D004920 5.6e-44 181.8 149 75.2
CDE11G0127 Ceratophyllum demersum HOM05D003690 ORTHO05D004920 7.3e-44 181.4 149 75.2
Ciclev10019400m.g Citrus clementina HOM05D003690 ORTHO05D004920 7.3e-44 181.4 154 72.7
Manes.13G044800 Manihot esculenta HOM05D003690 ORTHO05D004920 7.3e-44 181.4 157 69.4
ClCG09G007250 Citrullus lanatus HOM05D003690 ORTHO05D004920 9.6e-44 181.0 150 76.0
Gohir.D11G143000 Gossypium hirsutum HOM05D003690 ORTHO05D004920 9.6e-44 181.0 149 75.2
Prupe.8G204300 Prunus persica HOM05D003690 ORTHO05D004920 9.6e-44 181.0 149 73.2
Hund18351 Selenicereus undatus HOM05D003690 ORTHO05D004920 9.6e-44 181.0 149 72.5
MELO3C015809.2 Cucumis melo HOM05D003690 ORTHO05D004920 1.2e-43 180.6 150 74.7
Gohir.A11G136700 Gossypium hirsutum HOM05D003690 ORTHO05D004920 1.2e-43 180.6 149 74.5
Gorai.007G153300 Gossypium raimondii HOM05D003690 ORTHO05D004920 1.2e-43 180.6 149 74.5
Hund18349 Selenicereus undatus HOM05D003690 ORTHO05D004920 1.2e-43 180.6 149 72.5
BraA03t12684Z Brassica rapa HOM05D003690 ORTHO05D004920 2.1e-43 179.9 143 72.0
FAN25G2487 Fragaria x ananassa HOM05D003690 ORTHO05D004920 2.8e-43 179.5 149 75.2
THA.LOC104802677 Tarenaya hassleriana HOM05D003690 ORTHO05D004920 2.8e-43 179.5 152 71.7
Solyc06g083520.3 Solanum lycopersicum HOM05D003690 ORTHO05D004920 3.6e-43 179.1 156 73.1
SGA_v2.0_scaffold8G04649 Striga asiatica HOM05D003690 ORTHO05D004920 3.6e-43 179.1 192 62.0
Peaxi162Scf00107g01320 Petunia axillaris HOM05D003690 ORTHO05D004920 6.2e-43 178.3 150 70.7
RcHm_v2.0_Chr6g0285031 Rosa chinensis HOM05D003690 ORTHO05D004920 8.1e-43 177.9 153 73.2
Sed0007747 Sechium edule HOM05D003690 ORTHO05D004920 8.1e-43 177.9 150 74.0
CsaV3_7G027900 Cucumis sativus L. HOM05D003690 ORTHO05D004920 1.1e-42 177.6 150 74.0
BolC1t05572H Brassica oleracea HOM05D003690 ORTHO05D004920 1.8e-42 176.8 143 71.3
Atru.chr3.3177 Acer truncatum HOM05D003690 ORTHO05D004920 2.4e-42 176.4 147 73.5
Actinidia09489 Actinidia chinensis HOM05D003690 ORTHO05D004920 3.1e-42 176.0 161 68.9
AL3G18270 Arabidopsis lyrata HOM05D003690 ORTHO05D004920 3.1e-42 176.0 149 70.5
BraA01t04401Z Brassica rapa HOM05D003690 ORTHO05D004920 3.1e-42 176.0 143 72.0
vmacro14761 Vaccinium macrocarpon HOM05D003690 ORTHO05D004920 3.1e-42 176.0 193 59.1
FAN11G3512 Fragaria x ananassa HOM05D003690 ORTHO05D004920 6.9e-42 174.9 156 71.8
Potri.002G241100 Populus trichocarpa HOM05D003690 ORTHO05D004920 8.9e-42 174.5 194 58.8
BcaB04g21307 Brassica carinata HOM05D003690 ORTHO05D004920 1.2e-41 174.1 149 69.8
Sabra02G0183700 Salix brachista HOM05D003690 ORTHO05D004920 1.2e-41 174.1 194 58.2
AT3G07050 Arabidopsis thaliana HOM05D003690 ORTHO05D004920 1.5e-41 173.7 149 69.1
EL10Ac7g17783 Beta vulgaris HOM05D003690 ORTHO05D004920 1.5e-41 173.7 150 71.3
Ah.08g213950 Amaranthus hybridus HOM05D003690 ORTHO05D004920 2.0e-41 173.3 149 71.1
CARHR081630 Cardamine hirsuta HOM05D003690 ORTHO05D004920 3.4e-41 172.6 149 68.5
Lalb_Chr03g0036581 Lupinus albus HOM05D003690 ORTHO05D004920 3.4e-41 172.6 149 70.5
Sed0008284 Sechium edule HOM05D003690 ORTHO05D004920 3.4e-41 172.6 151 73.5
Aa31LG5G17610 Aethionema arabicum HOM05D003690 ORTHO05D004920 4.4e-41 172.2 149 69.1
Lj2C1133T2 Lonicera japonica HOM05D003690 ORTHO05D004920 7.6e-41 171.4 150 69.3
ATR0315G112 Amborella trichopoda HOM05D003690 ORTHO05D004920 9.9e-41 171.0 159 69.8
Rhsim01G0256500 Rhododendron simsii HOM05D003690 ORTHO05D004920 9.9e-41 171.0 201 57.7
Lsat_1_v5_gn_5_179901 Lactuca sativa HOM05D003690 ORTHO05D004920 2.2e-40 169.9 160 67.5
Dinv19210 Davidia involucrata HOM05D003690 ORTHO05D004920 2.9e-40 169.5 155 69.0
TPR.G19744 Trifolium pratense HOM05D003690 ORTHO05D004920 8.4e-40 167.9 149 69.1
CAN.G771.63 Capsicum annuum HOM05D003690 ORTHO05D004920 1.1e-39 167.5 163 65.6
SEGI_02950 Sequoiadendron giganteum HOM05D003690 ORTHO05D004920 1.9e-39 166.8 204 56.9
AUR62008870 Chenopodium quinoa HOM05D003690 ORTHO05D004920 9.3e-39 164.5 149 67.8
Lj5g0003167 Lotus japonicus HOM05D003690 ORTHO05D004920 6.0e-38 161.8 149 69.8
Zm00001eb049610 Zea mays HOM05D003690 ORTHO05D004920 6.0e-38 161.8 160 64.4
ECA248G3114 Erigeron canadensis HOM05D003690 ORTHO05D004920 7.8e-38 161.4 154 68.2
Phvul.007G235000 Phaseolus vulgaris HOM05D003690 ORTHO05D004920 1.0e-37 161.0 149 67.1
AUR62031840 Chenopodium quinoa HOM05D003690 ORTHO05D004920 3.9e-37 159.1 149 65.8
TWI18G0354 Tripterygium wilfordii HOM05D003690 ORTHO05D004920 3.9e-37 159.1 157 63.7
Lj6g0012707 Lotus japonicus HOM05D003690 ORTHO05D004920 1.1e-36 157.5 149 69.1
Migut.N02264 Erythranthe guttata HOM05D003690 ORTHO05D004920 2.5e-36 156.4 149 65.8
BcaC05g29835 Brassica carinata HOM05D003690 ORTHO05D004920 9.6e-36 154.5 149 66.4
C05p60340 Brassica napus HOM05D003690 ORTHO05D004920 9.6e-36 154.5 149 66.4
BolC5t34681H Brassica oleracea HOM05D003690 ORTHO05D004920 9.6e-36 154.5 149 66.4
Psat4g007640 Pisum sativum HOM05D003690 ORTHO05D004920 8.1e-35 151.4 149 65.1
TAR362G0926 Trochodendron aralioides HOM05D003690 ORTHO05D004920 1.8e-34 150.2 157 61.8
HanXRQChr10g0287311 Helianthus annuus HOM05D003690 ORTHO05D004920 2.4e-34 149.8 159 58.5
Os01g0375000 Oryza sativa ssp. japonica HOM05D003690 ORTHO05D004920 2.4e-34 149.8 159 60.4
A05p41150 Brassica napus HOM05D003690 ORTHO05D004920 6.9e-34 148.3 149 64.4
BraA05t22841Z Brassica rapa HOM05D003690 ORTHO05D004920 6.9e-34 148.3 149 64.4
Glyma.10G122200 Glycine max HOM05D003690 ORTHO05D004920 9.0e-34 147.9 149 64.4
Glyma.20G073900 Glycine max HOM05D003690 ORTHO05D004920 9.0e-34 147.9 149 62.4
HanXRQChr01g0014631 Helianthus annuus HOM05D003690 ORTHO05D004920 3.4e-33 146.0 154 62.3
Ca_13246_v3 Cicer arietinum L. HOM05D003690 ORTHO05D004920 4.5e-33 145.6 192 54.7
VMungo0720G3088 Vigna mungo HOM05D003690 ORTHO05D004920 4.5e-33 145.6 151 63.6
Nitab4.5_0004922g0050 Nicotiana tabacum HOM05D003690 ORTHO05D004920 9.9e-33 144.4 191 54.5
Pp3c12_9000 Physcomitrium patens HOM05D003690 ORTHO05D004920 9.9e-33 144.4 158 60.1
TWI36G0757 Tripterygium wilfordii HOM05D003690 ORTHO05D004920 1.3e-32 144.1 157 61.1
Zm00001eb219390 Zea mays HOM05D003690 ORTHO05D004920 1.3e-32 144.1 156 60.9
SalBow7G4783 Salvia bowleyana HOM05D003690 ORTHO05D004920 4.9e-32 142.1 149 64.4
AagrBONN_evm.TU.Sc2ySwM_344.4000 Anthoceros agrestis HOM05D003690 ORTHO05D004920 6.4e-32 141.7 160 58.8
MD10G1165800 Malus domestica HOM05D003690 ORTHO05D004920 1.1e-31 141.0 149 59.7
Migut.D00526 Erythranthe guttata HOM05D003690 ORTHO05D004920 4.2e-31 139.0 149 60.4
HPP92_023533 Vanilla planifolia HOM05D003690 ORTHO05D004920 7.1e-31 138.3 157 56.7
BcaC05g29759 Brassica carinata HOM05D003690 ORTHO05D004920 1.3e-29 134.0 152 59.9
DCAR_012635 Daucus carota HOM05D003690 ORTHO05D004920 1.3e-29 134.0 143 57.3
Cpa.g.sc8.169 Carica papaya HOM05D003690 ORTHO05D004920 3.6e-27 125.9 139 59.0
Medtr1g048030 Medicago truncatula HOM05D003690 ORTHO05D004920 1.4e-26 124.0 150 57.3
Mapoly0030s0053 Marchantia polymorpha HOM05D003690 ORTHO05D004920 1.8e-26 123.6 163 49.1
MD05G1177400 Malus domestica HOM05D003690 ORTHO05D004920 3.1e-26 122.9 149 57.0
SHI08009 Sapria himalayana HOM05D003690 ORTHO05D004920 4.5e-25 119.0 140 55.0
Lj1C84T11 Lonicera japonica HOM05D003690 ORTHO05D004920 7.6e-25 118.2 154 55.8
ECA236G1159 Erigeron canadensis HOM05D003690 ORTHO05D004920 3.2e-23 112.8 162 50.0
PSO210G6754 Papaver somniferum HOM05D003690 ORTHO05D004920 2.7e-22 109.8 151 55.0
PSO170G2973 Papaver somniferum HOM05D003690 ORTHO05D004920 1.3e-21 107.5 151 54.3
TPR.G21886 Trifolium pratense HOM05D003690 ORTHO05D028013 5.1e-21 105.5 88 75.0
Medtr7g056733 Medicago truncatula HOM05D003690 ORTHO05D028013 6.7e-21 105.1 88 75.0
BolC9t58687H Brassica oleracea HOM05D003690 ORTHO05D028013 2.1e-19 100.1 87 67.8
DCAR_000534 Daucus carota HOM05D003690 ORTHO05D004920 6.2e-19 98.6 201 43.3
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.1e-18 96.3 98 63.3
SMO147G0351 Selaginella moellendorffii HOM05D003690 ORTHO05D004920 3.1e-18 96.3 107 58.9
C09p58230 Brassica napus HOM05D003690 ORTHO05D028013 1.2e-17 94.4 87 65.5
Lalb_Chr06g0164341 Lupinus albus HOM05D003690 ORTHO05D004920 4.9e-16 89.0 154 47.4
Psat5g297440 Pisum sativum HOM05D003690 ORTHO05D004920 3.5e-14 82.8 147 45.6
MCO01G731 Micromonas commoda HOM05D003690 ORTHO05D004920 6.7e-13 78.6 153 41.8
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 1.5e-12 77.4 122 47.5
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 1.5e-12 77.4 122 47.5
CBR_g19336 Chara braunii HOM05D003690 ORTHO05D004920 9.6e-12 74.7 171 40.9
DCAR_010523 Daucus carota HOM05D000103 ORTHO05D003225 1.6e-11 73.9 96 49.0
Pp3c16_1080 Physcomitrium patens HOM05D003690 ORTHO05D004920 1.6e-11 73.9 160 43.1
Lsat_1_v5_gn_8_90060 Lactuca sativa HOM05D003690 ORTHO05D004920 2.8e-11 73.2 150 42.7
Cre12.g533050 Chlamydomonas reinhardtii HOM05D003690 ORTHO05D004920 8.2e-11 71.6 166 34.9
BNapus_Darmor_BZH_scaffold_109p00270 Brassica napus HOM05D003690 ORTHO05D004920 5.5e-07 58.9 62 56.5
TPR.G19804 Trifolium pratense HOM05D003690 ORTHO05D004920 4.6e-06 55.8 150 36.7


User provided reference genes

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