Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-78 296.2 161 100.0
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.3e-58 229.2 137 93.4
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 6.9e-47 191.0 137 80.3
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.8e-34 149.8 137 67.2
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.0e-34 149.1 137 63.5
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 7.4e-33 144.4 137 63.5
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 4.1e-31 138.7 138 65.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 6.9e-31 137.9 137 62.0
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.2e-30 137.1 137 63.5
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 3.4e-30 135.6 138 62.3
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.2e-29 132.9 136 64.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.9e-29 132.5 139 60.4
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 5.0e-29 131.7 137 64.2
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.0e-29 131.7 137 62.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 8.5e-29 131.0 138 60.9
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 8.5e-29 131.0 139 61.2
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 8.5e-29 131.0 137 61.3
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 4.2e-28 128.6 153 58.8
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 5.5e-28 128.3 153 56.2
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.6e-27 126.7 140 59.3
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.6e-27 125.6 137 62.8
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 6.1e-27 124.8 138 61.6
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.8e-26 123.2 142 57.0
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.0e-26 122.5 140 58.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.1e-25 120.6 137 55.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.5e-25 120.2 137 57.7
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-25 120.2 137 59.9
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 2.5e-25 119.4 140 60.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 2.5e-25 119.4 138 59.4
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 7.4e-25 117.9 137 58.4
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 7.4e-25 117.9 137 58.4
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.7e-25 117.5 138 58.0
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.7e-24 116.7 156 54.5
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.7e-24 116.7 137 56.9
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.2e-24 116.3 151 54.3
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.8e-24 115.9 140 57.9
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 4.8e-24 115.2 155 52.9
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 6.3e-24 114.8 141 58.9
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.2e-24 114.4 154 49.4
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.4e-23 113.6 137 56.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.8e-23 113.2 139 56.1
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.4e-23 112.8 138 58.7
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 6.9e-23 111.3 146 55.5
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 9.1e-23 110.9 160 51.9
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.1e-23 110.9 154 52.6
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.1e-23 110.9 154 53.2
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.1e-23 110.9 154 52.6
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-22 110.5 154 53.2
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.2e-22 110.5 149 55.7
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.5e-22 108.6 149 54.4
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-21 107.1 160 50.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-21 107.1 160 50.0
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.3e-21 107.1 146 54.8
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.3e-21 107.1 146 54.8
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.9e-21 105.9 137 53.3
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 6.5e-21 104.8 137 54.7
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.1e-20 104.0 151 50.3
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.4e-20 103.6 137 54.0
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.9e-20 103.2 162 50.0
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 2.5e-20 102.8 151 51.7
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.2e-20 102.4 154 52.6
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 5.5e-20 101.7 156 51.9
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 5.5e-20 101.7 142 53.5
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.6e-19 100.1 137 54.0
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 2.1e-19 99.8 135 55.6
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 3.6e-19 99.0 139 55.4
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.7e-19 98.6 159 46.5
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.7e-19 98.6 144 54.2
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 6.1e-19 98.2 138 52.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.8e-18 96.7 144 56.9
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 2.3e-18 96.3 140 52.9
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.0e-18 95.9 145 54.5
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 8.8e-18 94.4 150 48.0
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.5e-17 93.6 133 54.9
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.5e-17 93.6 133 54.9
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 9.7e-17 90.9 139 49.6
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.3e-16 90.5 182 42.3
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 1.7e-16 90.1 109 56.9
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.7e-16 90.1 132 50.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.2e-16 89.7 138 47.8
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.2e-16 89.7 138 47.8
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 3.7e-16 89.0 168 45.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 8.2e-16 87.8 137 51.8
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 8.2e-16 87.8 139 50.4
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.4e-15 86.3 74 63.5
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 3.1e-15 85.9 137 49.6
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 4.1e-15 85.5 52 80.8
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.9e-15 84.7 190 40.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 6.9e-15 84.7 51 82.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 9.1e-15 84.3 137 50.4
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.2e-14 84.0 51 80.4
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.5e-14 83.6 146 43.8
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.0e-14 83.2 137 50.4
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.6e-14 82.8 140 51.4
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.6e-14 82.8 177 44.6
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.4e-14 82.4 74 62.2
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 5.9e-14 81.6 141 50.4
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 5.9e-14 81.6 138 50.0
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 5.9e-14 81.6 135 51.9
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.0e-13 80.9 136 52.9
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.3e-13 80.5 137 50.4
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.7e-13 80.1 51 78.4
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.7e-13 80.1 180 39.4
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.8e-13 79.0 51 80.4
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 5.0e-13 78.6 182 39.0
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 6.5e-13 78.2 139 43.9
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.9e-12 76.6 67 59.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 3.2e-12 75.9 180 43.3
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 7.2e-12 74.7 108 52.8
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-11 73.9 180 38.3
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-11 73.2 57 64.9
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-11 73.2 57 64.9
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.1e-11 73.2 57 64.9
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.1e-11 73.2 57 64.9
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.1e-11 73.2 57 64.9
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.1e-11 73.2 57 64.9
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 3.6e-11 72.4 47 76.6
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 3.6e-11 72.4 107 50.5
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 4.7e-11 72.0 54 66.7
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 6.1e-11 71.6 147 46.3
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.8e-10 70.1 143 44.8
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.9e-10 68.9 57 61.4
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 8.8e-10 67.8 147 40.1
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.1e-09 67.4 145 45.5
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 2.0e-09 66.6 137 38.7
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 5.7e-09 65.1 153 41.8
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 5.7e-09 65.1 137 43.8
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 9.7e-09 64.3 153 41.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 4.8e-08 62.0 47 63.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.1e-07 58.9 138 37.0
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 7.0e-07 58.2 55 58.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.2e-06 57.4 183 35.5
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.6e-06 57.0 50 64.0
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.0e-06 56.6 56 58.9
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-06 56.6 138 39.9
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 3.5e-06 55.8 35 82.9
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.5e-06 55.8 29 93.1
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.5e-06 55.8 139 41.7
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 5.9e-06 55.1 64 48.4
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 5.9e-06 55.1 138 34.8
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 7.7e-06 54.7 146 34.2


User provided reference genes

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