Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 3.2e-221 772.3 492 100.0
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 1.3e-113 414.8 491 62.7
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 2.5e-112 410.6 499 64.5
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 2.8e-108 397.1 495 63.4
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.5e-106 391.3 485 63.1
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 6.7e-102 375.9 501 59.9
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 2.6e-101 374.0 501 58.9
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 1.8e-99 367.9 490 60.4
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 3.5e-98 363.6 490 57.6
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 8.5e-97 359.0 477 61.6
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 4.2e-96 356.7 473 61.1
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.6e-95 354.8 458 61.8
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 2.3e-94 350.9 458 63.8
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 3.9e-94 350.1 490 59.0
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 3.8e-89 333.6 426 61.7
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 2.7e-87 327.4 452 62.6
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 3.0e-86 323.9 474 60.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.8e-86 322.8 457 57.8
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.5e-85 321.6 469 58.6
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 7.5e-85 319.3 441 58.7
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.1e-83 315.5 409 61.4
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 4.5e-82 310.1 386 63.0
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 5.9e-82 309.7 391 62.4
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 7.7e-82 309.3 424 58.0
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.0e-81 308.9 384 61.2
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 1.3e-81 308.5 457 59.7
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.7e-81 308.1 452 58.6
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.2e-79 302.0 465 55.1
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 1.2e-79 302.0 406 60.8
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 2.1e-79 301.2 394 60.7
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 5.2e-78 296.6 256 60.9
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.5e-77 295.0 426 57.3
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.7e-77 293.1 429 60.4
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 7.5e-77 292.7 433 60.5
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 1.1e-75 288.9 455 57.4
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 5.4e-75 286.6 384 46.9
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 1.2e-74 285.4 384 46.6
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.2e-74 285.4 417 59.0
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 2.7e-74 284.3 384 45.3
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 2.7e-74 284.3 384 45.3
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 5.9e-74 283.1 256 59.4
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.3e-73 282.0 402 60.4
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.7e-73 281.6 466 55.4
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 5.0e-73 280.0 471 55.8
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 1.1e-72 278.9 416 51.9
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 7.2e-72 276.2 254 57.9
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.2e-71 275.4 250 61.2
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 6.1e-71 273.1 254 57.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 2.3e-70 271.2 251 57.4
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 5.2e-70 270.0 387 45.2
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.2e-69 268.9 353 64.6
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 2.0e-69 268.1 373 59.5
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.2e-68 264.6 263 53.2
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.9e-68 264.2 492 53.0
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 3.7e-68 263.8 254 56.3
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 1.8e-67 261.5 346 62.7
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.8e-67 261.5 447 55.7
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 3.5e-66 257.3 254 55.5
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.3e-65 255.4 430 56.0
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.9e-65 254.2 368 61.7
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 2.5e-64 251.1 409 57.0
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 2.5e-64 251.1 367 59.9
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.4e-62 245.4 436 54.4
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.5e-61 241.9 256 52.3
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.4e-61 240.4 257 51.0
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 1.3e-60 238.8 492 37.6
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 4.9e-60 236.9 251 51.8
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.1e-59 235.7 166 66.3
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 7.0e-59 233.0 318 66.0
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 3.9e-57 227.3 352 59.9
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 3.9e-57 227.3 251 49.4
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 4.3e-56 223.8 378 54.8
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 8.9e-54 216.1 165 60.6
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 7.5e-53 213.0 201 54.7
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 2.9e-52 211.1 165 60.0
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.4e-51 208.8 266 44.7
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.0e-49 202.6 170 57.6
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 2.1e-47 194.9 431 51.7
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.9e-43 181.8 137 60.6
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.4e-43 181.4 499 45.7
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.2e-42 179.1 115 71.3
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 2.8e-39 167.9 166 53.0
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.5e-37 162.2 241 69.3
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 9.9e-37 159.5 167 47.3
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.6e-34 150.6 106 66.0
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 8.7e-33 146.4 390 40.3
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 3.6e-31 141.0 86 75.6
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 3.1e-30 137.9 143 46.2
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.2e-29 136.0 144 43.8
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 2.0e-29 135.2 223 35.9
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 7.9e-26 123.2 136 43.4
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.3e-25 121.7 163 44.2
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.5e-24 119.0 207 76.3
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.1e-22 112.8 121 41.3
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.1e-22 112.8 121 41.3
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 3.1e-22 111.3 112 48.2
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 3.1e-22 111.3 112 48.2
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.4e-20 103.6 64 76.6
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 2.7e-18 98.2 63 74.6
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 2.2e-12 78.6 85 40.0
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 3.3e-08 64.7 137 29.9
arahy.Tifrunner.gnm1.ann1.ANG7EI Arachis hypogaea HOM05D002444 ORTHO05D009235 4.3e-08 64.3 62 45.2
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 9.6e-08 63.2 126 30.2
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 1.3e-07 62.8 151 23.2
Potri.005G090600 Populus trichocarpa HOM05D007202 ORTHO05D009125 1.3e-07 62.8 144 27.8
Sabra05G0074700 Salix brachista HOM05D007202 ORTHO05D009125 1.6e-07 62.4 144 27.1
Migut.G00038 Erythranthe guttata HOM05D007409 ORTHO05D009264 4.8e-07 60.8 131 25.2
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 6.3e-07 60.5 153 26.8
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 1.1e-06 59.7 141 21.3
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 1.1e-06 59.7 141 21.3
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 1.1e-06 59.7 141 21.3
MSTRG.10167 Avicennia marina HOM05D007409 ORTHO05D009264 1.8e-06 58.9 116 28.4
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 1.8e-06 58.9 129 27.1
Migut.O00586 Erythranthe guttata HOM05D007409 ORTHO05D009264 2.4e-06 58.5 131 24.4
TWI53G0827 Tripterygium wilfordii HOM05D007202 ORTHO05D009125 2.4e-06 58.5 146 27.4
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 3.1e-06 58.2 142 19.0
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 3.1e-06 58.2 149 24.2
HanXRQChr10g0294731 Helianthus annuus HOM05D004271 ORTHO05D006011 3.1e-06 58.2 130 21.5
SalBow3G2352 Salvia bowleyana HOM05D006740 ORTHO05D008571 3.1e-06 58.2 144 21.5
SGA_v2.0_scaffold64G22096 Striga asiatica HOM05D007409 ORTHO05D009264 3.1e-06 58.2 131 26.7
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.1e-06 57.8 112 32.1
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 4.1e-06 57.8 155 18.1
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 4.1e-06 57.8 170 19.4
SalBow3G1009 Salvia bowleyana HOM05D006740 ORTHO05D008571 4.1e-06 57.8 144 21.5
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 5.3e-06 57.4 141 21.3
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 6.9e-06 57.0 135 22.2
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 6.9e-06 57.0 142 20.4
Potri.010G148700 Populus trichocarpa HOM05D007409 ORTHO05D009264 9.0e-06 56.6 131 26.0
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 9.0e-06 56.6 142 26.8


User provided reference genes

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