Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 4.5e-197 691.0 342 100.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.1e-178 627.5 371 85.4
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.5e-165 584.7 340 84.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.3e-164 583.2 341 85.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.3e-164 582.4 339 84.4
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 3.8e-164 581.6 324 87.3
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.0e-164 581.3 338 84.9
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 6.6e-164 580.9 338 84.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 6.6e-164 580.9 338 83.4
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.3e-163 578.6 341 83.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 5.6e-163 577.8 342 83.3
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 7.3e-163 577.4 339 83.8
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 9.5e-163 577.0 339 83.8
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.2e-162 576.6 341 83.6
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.6e-162 576.2 341 83.3
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.6e-162 576.2 317 88.0
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 3.6e-162 575.1 339 83.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.0e-161 573.5 334 84.4
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-161 572.8 341 83.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.3e-161 572.4 341 83.0
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.3e-161 572.4 341 83.0
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.0e-161 572.0 342 83.9
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 5.2e-161 571.2 324 86.1
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 8.9e-161 570.5 333 85.0
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 8.9e-161 570.5 351 81.8
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.2e-160 570.1 340 83.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.5e-160 569.7 340 83.2
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.6e-160 568.9 340 82.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.6e-160 568.9 340 81.5
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 9.8e-160 567.0 338 82.2
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 9.8e-160 567.0 341 83.0
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.3e-159 566.6 340 82.1
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.3e-159 566.6 339 83.5
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.7e-159 566.2 340 82.4
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.7e-159 566.2 321 85.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 6.4e-159 564.3 340 81.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 8.3e-159 563.9 332 83.1
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 4.1e-158 561.6 342 81.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 9.2e-158 560.5 362 78.7
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.7e-157 558.9 334 82.6
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.9e-157 557.8 342 81.6
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 5.9e-157 557.8 317 85.5
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.0e-156 557.0 329 82.7
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.0e-156 557.0 342 81.3
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.0e-156 557.0 338 82.2
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.3e-156 556.6 333 83.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.7e-156 556.2 340 80.3
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 3.0e-156 555.4 340 80.9
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 3.0e-156 555.4 341 80.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.9e-156 555.1 340 80.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 5.0e-156 554.7 334 80.5
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.6e-156 554.3 321 86.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 6.6e-156 554.3 341 80.9
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.6e-156 554.3 338 82.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.1e-155 553.5 333 82.9
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.9e-155 552.7 333 82.3
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.5e-155 552.4 329 81.5
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.3e-155 551.6 334 82.3
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 5.6e-155 551.2 342 80.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 9.5e-155 550.4 342 81.3
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 9.5e-155 550.4 348 79.3
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 8.0e-154 547.4 341 80.9
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 8.0e-154 547.4 334 80.5
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.1e-153 547.0 317 84.2
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.1e-153 545.4 333 80.5
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 4.0e-153 545.0 330 81.8
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.2e-153 544.7 321 81.6
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.5e-152 543.1 332 80.1
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.4e-150 535.8 341 78.6
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.6e-149 533.1 335 78.5
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.0e-149 532.7 341 78.9
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 4.6e-149 531.6 335 78.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.3e-148 530.0 339 77.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.3e-148 530.0 339 77.9
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.9e-148 528.5 335 77.9
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 5.0e-148 528.1 335 78.2
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-147 526.9 341 78.3
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.5e-147 525.8 335 77.6
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.5e-147 525.8 335 77.6
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.3e-147 525.0 334 77.8
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 5.6e-147 524.6 339 77.3
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 7.3e-147 524.2 330 78.2
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.1e-146 522.7 335 77.3
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.4e-145 520.0 303 82.5
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 5.2e-145 518.1 356 75.3
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.4e-144 515.0 320 78.8
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.4e-142 510.0 347 76.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.1e-142 507.7 309 79.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.7e-140 503.1 340 75.3
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.6e-138 496.5 330 75.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.4e-137 492.7 338 73.4
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.2e-136 490.3 375 69.3
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 6.6e-132 474.6 327 74.0
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 3.3e-131 472.2 286 80.4
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.2e-128 463.8 320 71.2
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.6e-128 461.1 314 71.3
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 8.4e-127 457.6 344 66.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.2e-126 455.7 340 68.2
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.9e-124 448.7 262 85.5
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.3e-123 445.3 324 68.2
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 7.3e-123 444.5 283 74.6
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 2.8e-122 442.6 336 69.0
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.4e-118 430.3 344 62.2
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.4e-118 429.5 246 86.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 7.1e-118 427.9 319 66.5
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.7e-117 426.0 343 66.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 7.9e-117 424.5 361 64.0
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.3e-116 422.9 305 69.2
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.9e-116 422.2 322 64.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.9e-115 419.9 334 62.6
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.1e-113 414.1 262 78.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.4e-112 409.1 263 77.9
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.4e-105 386.3 309 62.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 9.3e-102 374.4 320 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.2e-101 374.0 338 55.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.7e-98 362.5 308 64.0
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.5e-96 357.1 212 84.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 8.5e-95 351.3 334 52.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 4.2e-94 349.0 189 92.6
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 3.0e-92 342.8 233 76.0
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 7.4e-91 338.2 189 89.4
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 5.9e-88 328.6 189 86.2
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 2.9e-87 326.2 189 86.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 9.7e-83 311.2 232 68.5
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.4e-81 307.4 211 75.8
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.5e-80 302.4 311 56.3
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.1e-73 278.1 163 79.8
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-72 277.7 197 67.5
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 7.7e-72 275.0 232 60.8
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 7.5e-67 258.5 237 62.9
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.7e-64 250.0 266 49.6
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.1e-62 244.6 308 44.2
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.0e-60 238.0 145 77.9
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.8e-58 229.2 145 77.2
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.6e-56 224.2 146 74.0
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.9e-54 217.2 158 72.2
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.3e-52 210.3 222 51.8
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.3e-42 177.9 163 58.3
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.0e-39 168.3 153 61.4
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 8.0e-37 158.7 100 74.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.4e-35 153.3 104 69.2
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.0e-27 127.5 208 37.5
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.7e-26 123.2 68 82.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 9.5e-22 108.6 88 69.3
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.7e-21 106.3 115 53.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.5e-19 101.3 62 72.6
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.4e-11 73.2 44 81.8
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.8e-11 72.8 45 75.6
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 3.8e-10 70.1 46 80.4
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.2e-09 66.6 37 81.1
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-07 61.6 77 39.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.3e-07 61.6 51 64.7
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 6.6e-07 59.3 50 62.0
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 8.7e-07 58.9 63 52.4


User provided reference genes

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