Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 5.6e-253 877.1 429 100.0
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.3e-169 600.1 435 67.4
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 1.1e-168 597.0 435 67.4
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.5e-168 595.9 437 69.1
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 4.2e-168 595.1 430 70.0
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 4.2e-168 595.1 430 70.0
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 1.6e-167 593.2 430 69.1
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.7e-167 592.4 430 69.3
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 1.5e-165 586.6 431 69.1
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 5.7e-165 584.7 437 68.0
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.0e-161 573.9 435 64.1
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.0e-161 573.9 435 64.4
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 2.0e-157 559.7 435 64.6
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 5.5e-152 541.6 499 56.1
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 5.5e-152 541.6 493 56.8
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 1.2e-151 540.4 427 63.7
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 3.0e-150 535.8 431 62.9
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 4.0e-150 535.4 426 61.7
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 3.4e-149 532.3 435 60.0
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 3.1e-147 525.8 427 60.7
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.3e-145 520.4 457 58.0
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.9e-145 519.2 445 58.7
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 1.1e-144 517.3 435 57.7
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 1.5e-144 516.9 417 58.5
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.3e-142 509.6 436 58.9
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 5.2e-142 508.4 428 59.3
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.2e-141 507.3 430 59.3
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 1.2e-141 507.3 431 59.9
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 5.7e-141 505.0 439 58.1
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 8.3e-140 501.1 437 58.8
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 1.1e-139 500.7 453 57.0
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 2.7e-138 496.1 426 58.7
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 3.5e-138 495.7 444 55.4
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 7.8e-138 494.6 444 57.0
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 7.8e-138 494.6 444 57.0
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 6.6e-137 491.5 436 57.1
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 8.6e-137 491.1 433 56.1
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 9.5e-136 487.6 431 55.7
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 3.6e-135 485.7 347 68.6
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 2.3e-134 483.0 435 54.7
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 8.9e-134 481.1 431 55.2
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 1.3e-132 477.2 430 54.4
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 2.2e-132 476.5 419 55.1
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 2.4e-131 473.0 429 54.3
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 3.2e-131 472.6 441 53.3
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 4.1e-131 472.2 435 53.6
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 5.4e-131 471.9 427 54.6
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 7.0e-131 471.5 445 53.0
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 1.2e-130 470.7 429 54.3
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 1.2e-130 470.7 429 54.3
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.6e-130 470.3 430 54.4
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 2.7e-130 469.5 429 54.3
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 3.5e-130 469.2 386 60.4
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 3.0e-129 466.1 430 53.0
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 3.9e-129 465.7 473 52.9
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 5.0e-129 465.3 429 53.8
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 5.0e-129 465.3 429 53.8
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 5.0e-129 465.3 435 52.9
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 6.6e-129 464.9 435 52.4
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 3.3e-128 462.6 435 53.1
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 4.3e-128 462.2 433 52.7
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 9.5e-128 461.1 429 53.4
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 3.6e-127 459.1 442 52.0
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 8.0e-127 458.0 435 53.3
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 1.8e-126 456.8 439 52.6
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 8.9e-126 454.5 436 50.9
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 6.4e-124 448.4 464 49.4
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 1.9e-123 446.8 423 53.4
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 1.9e-123 446.8 434 52.1
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.5e-122 442.6 423 53.0
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.0e-121 441.0 423 53.0
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.3e-121 440.7 447 50.6
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.8e-118 430.3 447 50.3
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 5.8e-117 425.2 435 50.6
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 1.7e-113 413.7 432 48.4
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 1.7e-108 397.1 437 47.8
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.1e-107 394.4 427 46.6
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 4.2e-107 392.5 427 46.4
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 6.6e-105 385.2 397 50.4
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 2.1e-103 380.2 471 47.1
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.2e-103 378.6 410 49.0
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.2e-103 378.6 410 49.0
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 1.8e-102 377.1 356 53.1
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.1e-102 376.3 346 55.8
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 9.0e-102 374.8 424 46.0
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.3e-100 370.9 437 44.2
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 1.9e-99 367.1 236 78.0
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 3.5e-90 336.3 459 41.0
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 4.3e-88 329.3 348 49.7
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 4.5e-85 319.3 495 38.6
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 2.1e-82 310.5 444 38.1
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 3.0e-81 306.6 425 40.0
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 9.6e-80 301.6 251 60.6
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.5e-77 294.3 388 41.2
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 3.4e-77 293.1 221 64.7
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 9.4e-59 231.9 179 61.5
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 1.8e-57 227.6 184 59.8
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 8.5e-52 208.8 182 53.8
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 2.0e-48 197.6 184 53.8
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 4.7e-42 176.4 162 58.0
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 4.7e-42 176.4 162 58.0
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 4.7e-42 176.4 162 58.6
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.8e-41 174.5 165 49.7
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 3.0e-41 173.7 145 60.7
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 4.0e-41 173.3 106 72.6
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 8.3e-39 165.6 125 60.0
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 7.0e-38 162.5 127 55.1
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 7.0e-38 162.5 119 62.2
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.7e-37 160.6 119 62.2
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 2.9e-36 157.1 127 63.8
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 2.7e-34 150.6 116 64.7
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.4e-33 148.3 120 56.7
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 2.8e-31 140.6 152 48.0
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 4.7e-26 123.2 84 67.9
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 3.4e-24 117.1 82 64.6
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.3e-23 115.2 138 43.5
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 4.9e-23 113.2 100 57.0
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 2.7e-21 107.5 88 63.6
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 1.2e-18 98.6 120 49.2
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 2.2e-15 87.8 87 49.4
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 1.1e-14 85.5 48 75.0
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 2.4e-14 84.3 48 70.8
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.6e-13 80.1 106 39.6
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 5.0e-12 76.6 87 41.4
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 1.5e-11 75.1 71 53.5
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 2.5e-11 74.3 51 62.7
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 9.5e-11 72.4 49 65.3
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 1.2e-10 72.0 89 42.7
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 8.9e-09 65.9 56 53.6
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 5.8e-08 63.2 37 67.6
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 1.9e-06 58.2 64 46.9
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 5.4e-06 56.6 113 33.6
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 5.4e-06 56.6 45 55.6


User provided reference genes

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