Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 9.1e-220 766.5 371 100.0
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 5.7e-113 411.8 363 60.3
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 7.7e-110 401.4 361 56.5
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 2.9e-109 399.4 363 56.2
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.8e-109 399.1 363 55.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.5e-108 397.1 359 56.3
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 9.4e-108 394.4 369 56.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-107 394.0 359 56.3
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 2.7e-107 392.9 363 55.1
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.8e-106 388.3 361 54.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.2e-105 387.5 363 57.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.0e-105 386.7 359 55.7
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.7e-104 383.6 361 54.8
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 8.3e-104 381.3 369 53.1
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.1e-103 379.0 363 55.6
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 9.2e-103 377.9 364 53.6
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 9.2e-103 377.9 369 52.6
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.0e-102 376.7 359 55.2
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.5e-102 375.6 361 52.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 5.9e-102 375.2 369 52.8
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 5.9e-102 375.2 363 52.6
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 5.9e-102 375.2 369 52.6
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.7e-101 373.6 363 53.7
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 5.0e-101 372.1 363 52.6
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 5.0e-101 372.1 363 52.6
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.1e-100 370.9 359 54.9
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 9.5e-100 367.9 356 53.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 9.5e-100 367.9 363 51.2
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 9.5e-100 367.9 365 54.0
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 9.5e-100 367.9 363 53.2
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.2e-99 367.5 363 51.5
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 4.7e-99 365.5 363 53.2
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 8.0e-99 364.8 363 51.8
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 6.8e-98 361.7 363 51.5
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 6.8e-98 361.7 363 52.9
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 5.7e-97 358.6 361 51.8
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.4e-95 354.0 363 54.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.1e-95 352.4 363 50.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.9e-94 348.6 364 51.1
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.0e-93 347.8 364 50.5
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.0e-93 347.8 359 49.6
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.3e-93 347.4 363 51.5
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 3.0e-93 346.3 363 51.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 6.6e-93 345.1 363 49.3
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 8.6e-93 344.7 363 51.5
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.9e-92 343.6 362 50.6
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.9e-92 343.6 359 50.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 2.5e-92 343.2 360 48.6
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 3.3e-92 342.8 363 51.0
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 9.5e-92 341.3 363 49.9
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.2e-91 340.9 363 52.1
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 3.6e-91 339.3 363 49.3
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.7e-91 339.0 363 49.6
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 6.2e-91 338.6 367 48.8
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.0e-91 338.2 371 49.6
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.0e-90 337.8 359 48.7
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.4e-90 337.4 363 49.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.8e-90 337.0 363 49.0
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 5.2e-90 335.5 359 49.9
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 6.8e-90 335.1 363 46.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.2e-89 334.3 371 48.8
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.0e-89 333.6 363 46.8
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 4.4e-89 332.4 363 46.8
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 4.4e-89 332.4 363 46.8
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 4.4e-89 332.4 363 46.8
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 4.4e-89 332.4 363 46.8
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 5.8e-89 332.0 363 46.6
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.8e-89 332.0 363 49.6
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 7.5e-89 331.6 363 49.3
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 9.8e-89 331.3 363 46.6
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 9.8e-89 331.3 363 49.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.3e-88 330.9 363 49.6
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-88 330.9 363 49.6
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.7e-88 330.5 363 46.6
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.7e-88 330.5 363 46.6
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.7e-88 330.5 363 46.8
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.7e-88 329.3 363 46.6
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 3.7e-88 329.3 359 50.4
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.3e-88 328.2 364 48.6
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 8.3e-88 328.2 363 49.0
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.9e-87 327.0 364 48.4
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.9e-87 327.0 363 46.0
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.1e-87 325.9 363 48.8
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 5.4e-87 325.5 363 49.6
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 5.4e-87 325.5 363 46.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.0e-87 325.1 363 48.8
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 9.2e-87 324.7 363 46.3
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 9.2e-87 324.7 363 49.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.2e-86 324.3 363 49.6
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 2.7e-86 323.2 363 45.7
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 7.8e-86 321.6 359 47.6
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.3e-85 320.9 402 45.8
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 5.0e-85 318.9 363 48.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 6.6e-85 318.5 363 47.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.5e-84 317.4 363 47.9
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.5e-84 316.6 362 48.6
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 3.3e-84 316.2 353 48.7
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.1e-83 313.5 359 47.6
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 4.1e-79 299.3 360 48.1
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 4.1e-79 299.3 363 44.4
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.7e-78 296.6 363 46.6
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 6.0e-78 295.4 363 41.9
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.7e-77 293.9 359 45.1
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-77 293.5 363 46.0
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 3.0e-77 293.1 363 46.0
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.1e-77 292.4 363 45.5
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.2e-75 287.7 345 45.2
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.1e-75 287.0 364 47.3
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.4e-74 284.3 363 44.6
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 5.2e-74 282.3 371 42.9
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 6.8e-74 282.0 357 43.1
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-73 281.2 192 67.7
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.7e-72 277.3 363 42.1
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 2.2e-72 276.9 361 44.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.3e-69 266.9 368 40.5
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.3e-69 266.9 368 40.5
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 5.1e-69 265.8 364 41.8
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 4.3e-68 262.7 184 65.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.6e-68 261.5 363 41.9
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 3.6e-67 259.6 371 39.9
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-59 234.2 172 66.3
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 6.2e-59 232.3 177 65.5
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 6.9e-58 228.8 353 37.4
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 6.0e-46 189.1 139 64.7
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 4.0e-42 176.4 129 65.1
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.6e-38 162.9 120 62.5
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.3e-35 154.8 198 42.9
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-33 148.3 100 68.0
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.7e-32 144.4 237 35.4
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 6.5e-32 142.5 359 30.4
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.2e-30 138.3 88 75.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 6.1e-30 136.0 85 75.3
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 6.7e-29 132.5 86 69.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.3e-28 130.2 81 74.1
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 4.3e-28 129.8 80 77.5
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.0e-24 118.6 84 64.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.7e-24 117.9 81 61.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 5.3e-18 96.3 81 50.6
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 9.7e-12 75.5 97 38.1
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.6e-09 67.4 51 60.8
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 9.4e-07 58.9 53 43.4
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 3.6e-06 57.0 61 45.9


User provided reference genes

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