Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 1.7e-257 892.1 436 100.0
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 4.9e-188 661.4 473 71.2
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.4e-187 659.8 470 71.3
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 7.3e-184 647.5 470 70.2
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 7.3e-184 647.5 474 69.2
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 6.6e-177 624.4 471 67.9
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 8.6e-177 624.0 464 68.1
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 1.9e-176 622.9 470 67.0
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.5e-176 622.5 467 68.1
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 9.5e-176 620.5 476 66.2
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 2.8e-175 619.0 468 66.2
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 8.1e-175 617.5 470 66.4
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 8.1e-175 617.5 469 66.7
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 2.3e-174 615.9 471 67.1
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 4.0e-174 615.1 468 66.5
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 5.2e-174 614.8 469 67.6
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 6.8e-174 614.4 470 66.0
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.2e-173 613.6 472 66.3
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 2.6e-173 612.5 470 65.7
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 4.4e-173 611.7 472 65.9
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.8e-173 611.3 461 66.6
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 7.5e-173 610.9 465 66.5
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 7.5e-173 610.9 471 65.6
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 9.9e-173 610.5 469 65.9
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 2.2e-172 609.4 495 63.8
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.9e-172 609.0 467 66.4
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 2.9e-172 609.0 472 65.9
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 2.9e-172 609.0 469 65.9
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 6.4e-172 607.8 473 65.3
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.9e-171 606.3 465 65.6
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 7.1e-171 604.4 472 65.7
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 1.6e-170 603.2 474 65.4
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 7.8e-170 600.9 463 65.7
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 1.0e-169 600.5 470 64.0
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 1.0e-169 600.5 470 64.0
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.9e-169 598.6 467 64.9
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 5.1e-169 598.2 475 64.2
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 8.6e-169 597.4 464 65.1
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.1e-168 597.0 472 65.7
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.5e-168 596.7 461 65.7
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.9e-168 596.3 464 65.1
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.9e-168 596.3 467 64.9
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 1.9e-168 596.3 463 65.2
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 3.3e-168 595.5 464 65.7
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.3e-168 595.5 492 62.6
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 9.5e-168 594.0 473 63.4
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.2e-167 593.6 448 67.6
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 1.6e-167 593.2 461 65.3
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 2.1e-167 592.8 472 64.2
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.8e-167 592.4 464 65.1
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.2e-167 591.3 472 64.4
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 6.2e-167 591.3 467 65.3
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 1.1e-166 590.5 466 64.6
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 1.8e-166 589.7 465 63.9
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.8e-166 589.7 461 65.1
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.4e-166 589.3 472 64.2
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 5.2e-166 588.2 468 64.1
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 5.2e-166 588.2 495 63.2
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 5.2e-166 588.2 472 64.2
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 5.2e-166 588.2 468 64.5
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 3.4e-165 585.5 474 64.1
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 3.4e-165 585.5 470 62.8
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 4.4e-165 585.1 463 64.1
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 4.4e-165 585.1 542 57.7
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 5.8e-165 584.7 473 63.0
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 9.9e-165 583.9 470 63.2
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 2.2e-164 582.8 463 65.2
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 2.2e-164 582.8 464 63.8
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 2.2e-164 582.8 489 61.8
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 6.4e-164 581.3 468 63.5
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 1.4e-163 580.1 549 56.6
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 9.2e-163 577.4 452 65.5
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 3.5e-162 575.5 465 63.7
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 4.6e-162 575.1 463 63.9
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 3.9e-161 572.0 465 62.2
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 5.1e-161 571.6 465 61.7
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 3.3e-160 568.9 472 62.3
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 7.3e-160 567.8 580 54.1
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 2.1e-159 566.2 471 60.1
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 4.8e-159 565.1 476 61.8
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 6.2e-159 564.7 459 62.1
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 3.1e-158 562.4 465 62.4
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 3.1e-158 562.4 327 79.2
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 6.9e-158 561.2 465 62.4
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.5e-157 560.1 445 64.7
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.5e-157 560.1 466 61.2
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 2.0e-157 559.7 486 59.7
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 2.0e-157 559.7 459 61.9
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 2.6e-157 559.3 459 61.0
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 3.4e-157 558.9 465 61.9
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 5.8e-157 558.1 468 61.8
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 9.9e-157 557.4 463 62.2
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 9.9e-157 557.4 468 61.8
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 2.2e-156 556.2 491 60.7
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 8.4e-156 554.3 466 61.6
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.9e-155 553.1 452 63.5
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 2.4e-155 552.7 327 78.6
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.6e-154 550.1 327 78.3
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.7e-153 546.6 456 62.5
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.6e-151 540.0 469 60.1
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.1e-151 539.7 327 77.1
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.0e-149 533.1 469 59.5
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 2.4e-147 526.2 464 60.3
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.5e-144 516.9 468 58.1
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 1.3e-140 503.8 398 65.8
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 2.3e-137 493.0 442 58.4
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 6.9e-134 481.5 477 52.6
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 2.6e-133 479.6 467 52.5
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 1.4e-131 473.8 464 52.6
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 6.7e-129 464.9 421 58.2
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 6.7e-129 464.9 455 52.7
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.5e-128 463.8 458 52.4
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 9.7e-128 461.1 466 52.6
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 4.8e-127 458.8 477 49.5
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 1.1e-126 457.6 461 54.0
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.0e-125 453.4 463 52.9
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.6e-125 453.0 466 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.1e-120 437.6 477 49.9
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.3e-120 436.0 348 64.1
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.4e-118 430.6 471 50.3
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.8e-113 413.7 354 60.7
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 4.5e-93 345.9 354 54.0
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.1e-91 341.3 316 58.5
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.6e-90 336.3 222 68.5
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-88 329.7 255 60.0
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.8e-86 323.9 505 40.4
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.7e-76 290.8 326 46.3
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.9e-71 273.5 224 62.1
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 1.9e-67 260.8 164 73.8
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.8e-65 254.2 167 70.1
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 6.8e-65 252.3 285 51.2
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 6.8e-57 225.7 290 47.9
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 5.4e-54 216.1 144 71.5
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.4e-46 189.5 113 76.1
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 1.1e-41 175.3 178 55.6
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 9.3e-38 162.2 242 41.7
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.0e-32 144.4 115 63.5
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 2.9e-31 140.6 199 46.7
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.4e-31 139.0 129 58.1
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 1.4e-17 95.1 113 51.3
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 7.2e-14 82.8 57 57.9
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.6e-13 81.6 130 40.0
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 2.7e-13 80.9 47 89.4
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 2.7e-13 80.9 47 89.4
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 6.7e-12 76.3 50 80.0
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 3.3e-11 73.9 43 88.4
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 3.7e-10 70.5 56 62.5
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 1.2e-08 65.5 57 52.6
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 4.5e-08 63.5 49 73.5
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 6.5e-07 59.7 40 70.0


User provided reference genes

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