Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 6.3e-202 707.2 353 100.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 6.2e-133 478.0 333 74.2
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.8e-130 468.8 333 71.8
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 4.1e-129 465.3 253 90.1
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.2e-125 453.8 330 68.8
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.4e-124 450.3 332 67.8
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.4e-122 441.4 335 66.9
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.2e-120 437.2 331 66.8
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 2.1e-120 436.4 335 66.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.6e-120 435.3 340 65.6
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 4.3e-118 428.7 330 65.2
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 8.1e-117 424.5 332 65.7
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.5e-115 420.2 332 63.6
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 5.8e-115 418.3 337 63.5
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 2.2e-114 416.4 327 63.3
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 3.8e-114 415.6 332 63.6
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 4.9e-114 415.2 330 63.6
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 6.4e-114 414.8 328 63.7
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.9e-113 413.3 332 63.9
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 4.2e-113 412.1 324 64.5
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 7.1e-113 411.4 332 63.0
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 9.3e-113 411.0 329 64.4
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.2e-112 410.6 324 63.0
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.2e-112 410.6 335 63.0
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 2.1e-112 409.8 332 63.0
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.7e-112 409.5 332 63.6
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.5e-112 409.1 331 62.8
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 3.5e-112 409.1 332 63.3
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 4.6e-112 408.7 326 62.9
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 6.0e-112 408.3 330 63.6
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 6.0e-112 408.3 332 61.4
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 7.9e-112 407.9 332 62.3
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.9e-112 407.9 334 61.7
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.8e-111 406.8 332 62.7
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.3e-111 406.4 324 63.3
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 2.3e-111 406.4 335 63.0
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.3e-111 406.4 324 63.3
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.0e-111 406.0 334 61.7
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.0e-111 406.0 330 63.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 3.9e-111 405.6 335 62.7
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 6.7e-111 404.8 324 63.3
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 8.7e-111 404.4 332 63.0
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.1e-110 404.1 331 62.2
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.5e-110 403.7 332 62.7
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 4.3e-110 402.1 331 61.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.3e-110 402.1 328 62.5
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 5.6e-110 401.7 324 63.0
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 9.6e-110 401.0 354 58.8
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 9.6e-110 401.0 328 62.5
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.6e-109 400.2 332 62.0
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 2.8e-109 399.4 332 60.2
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 2.8e-109 399.4 332 61.7
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 3.6e-109 399.1 332 60.5
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 6.2e-109 398.3 332 63.3
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.1e-108 397.5 332 60.5
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.8e-108 396.7 294 68.4
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.8e-108 396.7 332 61.7
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 2.4e-108 396.4 333 60.4
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 3.1e-108 396.0 328 62.5
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.6e-107 392.9 335 60.6
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 5.8e-107 391.7 331 59.2
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 2.2e-106 389.8 327 60.2
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 2.2e-106 389.8 326 61.3
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 3.8e-106 389.0 327 60.2
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.9e-105 386.7 341 61.6
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 3.5e-104 382.5 332 59.3
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.8e-103 380.2 294 65.3
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 1.8e-103 380.2 335 58.5
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 1.8e-103 380.2 330 60.3
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.3e-103 379.8 332 56.3
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 6.7e-103 378.3 330 58.5
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 8.7e-103 377.9 333 59.2
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 8.7e-103 377.9 333 57.7
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.1e-102 377.5 332 57.2
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 3.3e-102 375.9 333 56.2
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.3e-102 375.6 332 57.5
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 5.6e-102 375.2 332 57.2
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 4.0e-100 369.0 332 58.1
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 9.0e-100 367.9 334 56.9
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.5e-99 367.1 333 56.5
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 4.5e-99 365.5 251 71.7
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 7.6e-99 364.8 334 56.3
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 7.6e-99 364.8 326 57.4
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.0e-98 364.4 326 57.7
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.7e-98 363.6 326 57.1
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 3.8e-98 362.5 326 57.4
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 6.5e-98 361.7 326 57.4
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.1e-97 360.9 314 60.2
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 3.2e-97 359.4 330 56.4
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 3.2e-97 359.4 330 56.1
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.6e-96 357.1 253 66.0
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.6e-96 357.1 253 66.0
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.6e-96 357.1 342 55.8
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 2.1e-96 356.7 394 50.5
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.8e-95 353.6 348 50.9
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.0e-95 352.8 332 55.1
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 3.9e-95 352.4 322 56.5
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.9e-95 352.4 277 61.7
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 5.1e-95 352.1 347 52.7
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 5.1e-95 352.1 334 53.0
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 6.7e-95 351.7 329 55.0
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.7e-95 351.7 332 55.1
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.9e-94 350.1 297 58.2
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.9e-94 350.1 340 51.5
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 5.7e-94 348.6 288 60.1
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.8e-92 343.6 350 52.6
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.3e-90 337.4 310 57.7
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.9e-89 333.6 253 60.9
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 2.3e-87 326.6 325 53.8
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-84 317.8 253 58.5
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.4e-84 317.4 330 49.7
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.4e-84 317.4 329 50.5
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.8e-84 317.0 332 53.3
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 5.9e-83 312.0 325 50.5
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.1e-81 307.8 332 51.2
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 3.2e-81 306.2 329 48.6
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.2e-80 304.3 196 74.0
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.3e-76 288.9 241 58.1
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 1.5e-75 287.3 320 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.7e-74 283.9 302 48.7
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.3e-69 267.7 324 42.6
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.8e-69 265.8 210 63.8
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 3.0e-63 246.5 331 45.0
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 2.5e-57 226.9 200 60.5
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 9.4e-57 224.9 207 56.5
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 2.1e-56 223.8 189 61.9
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.2e-54 218.0 294 43.2
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 2.6e-54 216.9 277 40.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.0e-51 207.2 139 69.1
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 2.0e-51 207.2 242 43.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.0e-50 202.6 158 61.4
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 5.4e-44 182.6 205 50.7
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 9.5e-41 171.8 173 49.7
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.0e-38 164.1 279 36.9
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 2.6e-38 163.7 260 36.9
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.0e-34 150.2 154 50.6
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 2.1e-32 144.1 278 31.7
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.6e-30 137.1 205 38.5
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 4.4e-30 136.3 207 38.6
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.6e-27 127.9 118 55.1
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 5.2e-23 112.8 303 32.0
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.5e-22 109.0 90 64.4
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.5e-22 109.0 90 64.4
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.9e-20 104.4 120 46.7
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 1.2e-19 101.7 286 29.7
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.7e-18 97.8 131 42.7
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.1e-17 95.1 112 43.8
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.0e-14 84.3 113 42.5
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.4e-12 78.2 86 52.3
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 1.9e-12 77.8 77 54.5
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 8.7e-10 68.9 58 56.9
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 5.6e-09 66.2 64 57.8
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.6e-08 64.7 65 47.7


User provided reference genes

Program Settings