Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 0.0e+00 1094.3 543 100.0
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 4.6e-244 847.8 537 78.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 4.6e-244 847.8 523 79.9
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.1e-240 836.6 539 78.5
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 9.9e-239 830.1 523 78.6
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 4.9e-238 827.8 545 75.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.4e-237 825.5 542 75.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.3e-235 819.7 541 75.8
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.0e-235 818.5 543 75.0
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.9e-235 818.1 527 78.7
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.5e-234 813.5 541 76.0
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 9.5e-234 813.5 544 75.6
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.4e-232 808.9 542 74.4
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 3.1e-232 808.5 542 74.7
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 3.1e-232 808.5 544 74.4
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 4.0e-232 808.1 544 74.4
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 6.8e-232 807.4 543 73.8
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 8.9e-232 807.0 541 74.7
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.6e-228 794.7 542 73.1
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.3e-227 792.3 537 74.3
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.2e-221 771.9 538 73.4
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.2e-220 770.0 545 73.2
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.0e-219 765.4 541 73.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 5.1e-219 764.6 538 73.2
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 6.6e-219 764.2 546 72.3
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.5e-218 763.1 531 73.3
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.5e-218 763.1 546 72.2
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-218 762.7 546 72.2
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.5e-218 762.3 546 72.0
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.5e-218 762.3 546 72.2
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.3e-218 761.9 546 72.2
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.3e-218 760.8 542 70.5
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.3e-217 760.0 538 72.9
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.6e-217 759.6 546 72.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 3.6e-217 758.4 547 71.5
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 6.2e-217 757.7 545 72.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.1e-217 757.3 538 72.9
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.4e-216 756.5 544 71.7
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.8e-216 756.1 544 70.4
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 9.0e-216 753.8 547 71.5
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.0e-215 752.7 538 71.9
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 3.4e-215 751.9 544 72.2
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 5.8e-215 751.1 528 71.6
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 8.4e-214 747.3 542 70.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.1e-212 742.7 543 70.9
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.7e-212 742.3 542 69.2
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.5e-212 741.9 623 63.6
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.3e-211 739.2 536 70.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 3.9e-211 738.4 545 70.3
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.5e-210 736.5 543 70.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.5e-210 736.5 550 70.0
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.9e-210 736.1 517 72.5
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 9.6e-210 733.8 562 69.2
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 9.6e-210 733.8 537 70.2
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.7e-209 731.9 539 69.6
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.4e-208 729.9 537 69.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 3.1e-208 728.8 542 69.4
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 7.6e-207 724.2 541 68.8
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.0e-206 723.8 540 69.6
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.7e-206 723.0 566 67.7
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 4.9e-206 721.5 527 70.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.2e-205 718.8 534 69.1
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 7.1e-205 717.6 546 68.5
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 7.1e-205 717.6 519 70.7
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.6e-204 716.5 520 71.2
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 2.1e-204 716.1 539 69.0
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.9e-202 709.5 507 69.8
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.3e-202 708.8 546 68.1
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 4.3e-202 708.4 537 67.8
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 7.4e-202 707.6 492 74.2
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.7e-201 705.3 542 68.6
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.4e-199 698.7 524 67.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 7.6e-199 697.6 537 66.7
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.3e-198 696.8 496 72.8
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.2e-198 696.0 539 66.8
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 2.9e-198 695.7 581 64.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.5e-197 692.6 539 67.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 3.2e-197 692.2 542 66.4
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 4.2e-197 691.8 533 66.8
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.3e-193 680.2 540 65.6
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 3.1e-192 675.6 543 66.1
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.1e-192 675.2 540 64.6
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 4.1e-192 675.2 551 65.5
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.5e-189 666.0 531 66.5
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.5e-189 666.0 531 66.5
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.2e-189 665.6 468 73.9
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 2.0e-186 656.4 553 63.7
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.9e-182 642.5 530 64.5
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 5.0e-182 641.7 529 63.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 3.6e-180 635.6 539 62.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.0e-179 634.0 557 61.4
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.8e-179 633.3 505 66.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.0e-179 632.5 505 66.9
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.5e-178 630.2 500 66.8
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 4.4e-178 628.6 371 85.4
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.1e-176 624.0 554 60.5
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.8e-176 623.2 366 85.0
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-174 616.7 451 71.4
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 5.2e-171 605.1 366 82.5
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.7e-170 601.7 527 59.4
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 3.7e-169 599.0 555 59.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 7.7e-167 591.3 520 59.8
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.1e-164 583.2 566 58.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 6.1e-164 581.6 575 54.4
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.0e-163 579.3 510 59.2
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 8.8e-163 577.8 467 66.0
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.3e-161 573.9 519 58.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.6e-159 567.0 364 76.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.4e-157 557.8 422 68.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.4e-152 542.0 496 57.9
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 2.0e-151 540.0 386 71.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.7e-150 537.0 489 59.7
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.8e-148 529.6 520 55.0
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 6.1e-148 528.5 362 75.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.5e-141 507.3 535 52.1
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.9e-141 506.9 540 50.2
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 7.3e-141 505.0 518 52.1
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 5.8e-138 495.4 426 64.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 6.2e-132 475.3 525 49.5
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 5.1e-126 455.7 317 71.9
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.9e-125 453.8 540 46.5
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 8.1e-124 448.4 345 69.6
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 5.2e-123 445.7 394 63.2
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 9.0e-107 391.7 446 47.8
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.8e-105 386.3 503 47.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-101 374.4 292 67.1
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.2e-98 364.8 400 54.8
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.5e-96 355.9 326 60.1
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.0e-87 325.9 320 57.8
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 9.3e-80 302.0 261 60.5
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 3.3e-69 266.9 425 37.9
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.3e-69 266.5 245 56.3
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.7e-68 263.5 261 54.4
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-67 261.5 192 67.2
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 3.1e-59 233.8 338 40.5
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.2e-56 223.8 174 64.9
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.4e-54 218.4 222 58.1
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.4e-53 213.4 174 63.8
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.1e-51 208.8 175 61.1
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 4.1e-51 206.8 359 37.6
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.6e-42 178.3 164 57.3
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.6e-39 168.3 194 50.5
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.8e-37 159.1 100 74.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-35 154.8 106 67.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.4e-27 126.7 128 61.7
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.6e-26 123.6 385 27.3
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-25 122.1 68 82.4
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.9e-20 103.6 78 61.5
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.7e-17 95.1 65 73.8
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.8e-15 87.8 92 50.0
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 4.0e-14 84.0 72 61.1
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.0e-10 70.1 45 73.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.3e-09 68.2 46 63.0
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 3.0e-09 67.8 38 81.6
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 9.5e-08 62.8 89 41.6
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 4.7e-07 60.5 33 81.8
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.7e-07 60.5 51 62.7
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.1e-06 57.8 35 62.9
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 8.9e-06 56.2 38 68.4


User provided reference genes

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