Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.3e-240 835.1 409 100.0
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.5e-231 805.8 409 95.4
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.0e-223 778.9 409 90.7
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 3.3e-223 778.1 409 90.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.7e-222 775.8 404 91.6
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.4e-221 772.7 409 90.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.8e-221 772.3 404 91.1
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 5.3e-221 770.8 405 90.4
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 7.0e-221 770.4 409 89.0
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 9.1e-221 770.0 406 90.1
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.2e-220 769.6 409 89.5
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 4.5e-220 767.7 407 88.7
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 89.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 88.8
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.0e-219 766.5 408 89.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.7e-219 765.8 404 89.9
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 3.8e-219 764.6 409 89.5
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 88.8
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 5.0e-219 764.2 407 89.2
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 5.0e-219 764.2 404 89.9
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 5.0e-219 764.2 404 89.6
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 88.3
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.1e-218 763.1 409 88.8
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.5e-218 761.9 404 90.3
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 87.8
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 4.2e-218 761.1 406 89.2
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.1e-217 758.8 409 88.0
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.6e-217 758.1 408 87.7
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 6.1e-217 757.3 405 87.9
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 88.2
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 87.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 87.7
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 87.7
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.0e-216 754.6 409 87.0
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 5.2e-216 754.2 409 87.3
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 5.2e-216 754.2 409 87.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.8e-216 753.8 409 86.3
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 8.8e-216 753.4 409 87.3
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.2e-215 753.1 425 85.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 87.7
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 2.0e-215 752.3 409 87.0
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 2.6e-215 751.9 436 84.2
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 3.4e-215 751.5 411 87.6
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 85.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 7.5e-215 750.4 406 87.2
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.5e-215 750.4 406 87.7
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 7.5e-215 750.4 406 87.9
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 9.8e-215 750.0 406 86.9
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.3e-214 749.6 409 86.8
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.3e-214 749.6 406 86.7
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.7e-214 749.2 409 86.8
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.7e-214 749.2 406 87.2
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.7e-214 749.2 406 87.2
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 2.2e-214 748.8 410 87.1
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 3.7e-214 748.0 406 87.2
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 4.8e-214 747.7 406 86.5
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 6.3e-214 747.3 409 86.6
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 6.3e-214 747.3 406 87.2
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 8.3e-214 746.9 406 86.7
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 8.3e-214 746.9 406 86.2
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 8.3e-214 746.9 406 86.9
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 8.3e-214 746.9 404 87.6
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.3e-214 746.9 409 85.8
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.1e-213 746.5 406 87.2
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 85.8
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 3.1e-213 745.0 406 85.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.0e-213 743.8 406 86.5
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 7.0e-213 743.8 452 81.0
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 86.1
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 86.3
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-212 743.0 409 85.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.2e-212 743.0 409 85.8
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.2e-212 743.0 448 80.8
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.2e-212 743.0 409 85.6
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 86.0
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 86.5
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 86.2
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 4.5e-212 741.1 409 85.6
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.5e-212 741.1 409 84.8
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 5.9e-212 740.7 409 84.8
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.9e-212 740.7 406 86.2
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 7.7e-212 740.3 409 85.8
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.3e-211 739.6 405 86.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.3e-211 738.8 409 85.6
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.9e-211 738.4 409 84.6
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.9e-211 738.4 409 85.3
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 85.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 85.1
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 5.0e-211 737.6 421 84.3
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 406 86.5
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 5.0e-211 737.6 410 84.6
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 6.6e-211 737.3 410 84.6
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.1e-210 736.5 410 85.6
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.9e-210 735.7 409 85.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 4.2e-210 734.6 409 84.8
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.2e-210 733.8 476 76.9
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.2e-209 733.0 407 85.0
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 2.8e-209 731.9 410 85.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 2.8e-209 731.9 410 85.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.8e-209 731.9 410 85.4
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 4.7e-209 731.1 406 84.7
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 6.1e-209 730.7 404 85.4
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.3e-208 728.8 406 84.0
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.3e-208 728.8 520 71.9
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 5.2e-208 727.6 406 83.5
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.4e-207 724.9 405 83.5
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.4e-205 718.8 396 85.4
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 9.2e-205 716.8 405 82.7
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.7e-204 715.3 406 82.5
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 5.0e-203 711.1 377 89.4
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.1e-202 709.9 406 82.5
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.9e-202 709.1 452 75.2
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 3.1e-200 701.8 381 87.7
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 4.0e-200 701.4 385 85.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.3e-198 696.4 386 86.3
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.1e-197 693.3 415 81.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 3.2e-197 691.8 410 82.0
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.5e-194 682.2 358 89.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 3.3e-194 681.8 413 78.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.3e-190 669.8 379 83.1
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.9e-189 666.0 356 88.2
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.1e-189 664.8 392 80.4
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 7.8e-188 660.6 409 76.5
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 3.9e-187 658.3 358 86.9
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 5.8e-183 644.4 406 77.8
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.5e-178 629.8 404 73.8
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.5e-178 629.8 405 73.3
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 3.2e-173 612.1 393 72.5
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.0e-172 607.8 406 71.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.6e-169 598.6 320 87.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 7.3e-162 574.3 400 67.8
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.6e-159 565.8 387 72.9
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.4e-158 560.8 409 69.4
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 7.4e-146 521.2 318 78.6
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.8e-145 518.5 310 82.3
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.5e-143 513.5 400 62.8
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.5e-130 469.5 245 91.4
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.0e-126 457.6 258 83.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.9e-123 445.7 368 60.6
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.0e-118 431.0 385 55.6
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 3.0e-115 419.5 238 83.2
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 7.0e-112 408.3 225 85.3
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 2.6e-106 389.8 239 78.7
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 7.2e-101 371.7 197 88.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.7e-81 306.2 393 44.3
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.1e-75 288.1 390 43.3
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 3.7e-73 279.6 183 75.4
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 3.5e-71 273.1 180 73.3
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 6.2e-60 235.7 141 75.2
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-59 235.0 140 75.7
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.2e-57 227.3 124 85.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.4e-49 199.1 104 92.3
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.8e-20 103.2 58 77.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 5.3e-19 99.8 128 44.5
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 2.6e-10 70.9 332 22.9
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 1.0e-09 68.9 327 23.2


User provided reference genes

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