Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 3.2e-56 221.9 142 100.0
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 3.4e-42 175.3 134 75.4
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 4.5e-42 174.9 126 77.8
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 5.9e-42 174.5 126 77.8
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.0e-41 173.7 126 77.0
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 1.3e-41 173.3 126 77.0
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.3e-41 173.3 126 76.2
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 1.3e-41 173.3 126 77.0
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.2e-41 172.6 126 75.4
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.9e-41 172.2 126 76.2
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.9e-41 172.2 126 76.2
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 2.9e-41 172.2 126 76.2
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 2.9e-41 172.2 126 76.2
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 2.9e-41 172.2 126 75.4
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 2.9e-41 172.2 126 75.4
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.8e-41 171.8 134 70.9
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 5.0e-41 171.4 126 85.7
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 6.5e-41 171.0 126 75.4
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 8.5e-41 170.6 127 76.4
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 8.5e-41 170.6 126 76.2
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.1e-40 170.2 126 75.4
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.1e-40 170.2 125 84.8
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 1.1e-40 170.2 126 75.4
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.4e-40 169.9 126 82.5
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 1.4e-40 169.9 126 75.4
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.4e-40 169.9 126 74.6
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.9e-40 169.5 127 75.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.9e-40 169.5 127 82.7
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 1.9e-40 169.5 126 74.6
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 5.5e-40 167.9 126 77.0
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 5.5e-40 167.9 126 75.4
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 5.5e-40 167.9 127 85.0
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 7.2e-40 167.5 126 84.9
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 1.2e-39 166.8 126 73.0
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.2e-39 166.8 125 74.4
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.2e-39 166.8 125 74.4
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 1.6e-39 166.4 126 74.6
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.1e-39 166.0 126 73.0
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 2.1e-39 166.0 127 73.2
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 2.7e-39 165.6 126 73.8
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 3.6e-39 165.2 127 74.0
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 3.6e-39 165.2 126 76.2
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 3.6e-39 165.2 126 80.2
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 4.7e-39 164.9 128 75.0
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 6.1e-39 164.5 128 73.4
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 7.9e-39 164.1 125 82.4
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 7.9e-39 164.1 140 70.0
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.0e-38 163.7 129 73.6
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 1.8e-38 162.9 126 71.4
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 2.3e-38 162.5 125 72.8
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 2.3e-38 162.5 126 71.4
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 2.3e-38 162.5 126 72.2
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 3.0e-38 162.2 126 83.3
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 3.0e-38 162.2 127 73.2
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 3.0e-38 162.2 130 72.3
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 3.9e-38 161.8 129 72.9
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 3.9e-38 161.8 130 71.5
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 6.7e-38 161.0 127 72.4
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 6.7e-38 161.0 115 93.0
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-37 160.2 132 71.2
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.5e-37 159.8 128 71.9
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.5e-37 159.8 130 70.8
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.0e-37 159.5 126 82.5
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.0e-37 159.5 129 84.5
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.0e-37 159.5 129 84.5
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 2.0e-37 159.5 168 59.5
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.0e-37 159.5 125 72.0
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.3e-37 158.7 126 70.6
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 3.3e-37 158.7 128 71.9
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 4.4e-37 158.3 129 71.3
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 5.7e-37 157.9 147 64.6
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 7.4e-37 157.5 132 69.7
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 7.4e-37 157.5 128 71.1
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 7.4e-37 157.5 127 79.5
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 9.7e-37 157.1 129 70.5
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 9.7e-37 157.1 128 71.1
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 9.7e-37 157.1 129 82.9
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 3.7e-36 155.2 128 70.3
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 4.8e-36 154.8 128 69.5
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 4.8e-36 154.8 114 77.2
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.3e-36 154.5 116 74.1
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.8e-35 152.9 128 68.8
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 4.1e-35 151.8 127 68.5
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 5.3e-35 151.4 126 81.7
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 5.3e-35 151.4 126 79.4
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 7.0e-35 151.0 128 80.5
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 9.1e-35 150.6 114 75.4
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 9.1e-35 150.6 114 74.6
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 2.6e-34 149.1 121 71.1
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 3.5e-34 148.7 129 80.6
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 3.5e-34 148.7 114 81.6
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.5e-34 148.7 129 80.6
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 7.7e-34 147.5 124 69.4
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 7.7e-34 147.5 114 72.8
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.7e-33 146.4 123 68.3
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.7e-33 146.4 114 71.1
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 5.0e-33 144.8 129 72.9
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 5.0e-33 144.8 114 85.1
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 5.0e-33 144.8 126 74.6
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 6.5e-33 144.4 122 67.2
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 1.1e-32 143.7 114 70.2
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 1.1e-32 143.7 120 68.3
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.9e-32 142.9 110 80.0
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.2e-32 142.1 117 71.8
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 5.5e-32 141.4 126 70.6
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 7.2e-32 141.0 114 71.1
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.2e-31 140.2 129 77.5
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.6e-31 139.8 115 71.3
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 8.0e-31 137.5 117 82.1
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 2.3e-30 136.0 110 70.0
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 2.3e-30 136.0 114 66.7
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 8.8e-30 134.0 128 74.2
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 4.4e-29 131.7 111 71.2
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 4.8e-28 128.3 130 71.5
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 8.2e-28 127.5 128 72.7
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.4e-27 126.7 150 54.7
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 7.0e-27 124.4 129 61.2
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 3.5e-26 122.1 143 58.0
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 7.7e-26 120.9 80 82.5
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 3.8e-25 118.6 80 81.2
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 8.5e-25 117.5 84 76.2
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 7.2e-24 114.4 132 68.2
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 4.0e-22 108.6 96 65.6
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 4.0e-22 108.6 64 90.6
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 3.4e-21 105.5 66 84.8
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 1.7e-20 103.2 66 86.4
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 3.7e-20 102.1 123 63.4
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 6.3e-20 101.3 66 81.8
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.7e-18 95.9 84 66.7
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 5.9e-18 94.7 77 67.5
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 7.7e-18 94.4 83 65.1
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 6.5e-17 91.3 60 83.3
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 6.1e-15 84.7 267 33.0
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.8e-14 83.2 52 84.6
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 8.9e-14 80.9 84 54.8
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 8.9e-14 80.9 83 53.0
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 2.2e-12 76.3 49 81.6
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 4.1e-11 72.0 73 61.6
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.0e-09 67.4 60 61.7
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 3.3e-08 62.4 63 60.3
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 1.6e-07 60.1 59 54.2
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.0e-06 57.4 40 77.5


User provided reference genes

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